Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 0.0e+00 2056.6 1032 100.0
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 0.0e+00 1504.6 1065 74.8
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 0.0e+00 1303.9 1073 65.9
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 0.0e+00 1303.5 1088 64.4
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 0.0e+00 1262.3 1214 57.9
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 0.0e+00 1252.3 1254 56.3
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 0.0e+00 1246.5 1011 66.3
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 0.0e+00 1201.0 1049 63.3
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 0.0e+00 1180.2 713 84.9
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 0.0e+00 1120.9 1011 61.3
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 0.0e+00 1111.3 1005 61.3
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 4.4e-280 968.4 1135 49.4
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 5.4e-278 961.4 1126 50.1
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 4.6e-277 958.4 1124 50.1
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.2e-272 943.7 1150 48.7
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.7e-271 939.9 1119 48.6
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 8.3e-271 937.6 1119 48.9
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 4.1e-270 935.3 1126 49.4
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 3.5e-269 932.2 1128 48.8
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 5.1e-268 928.3 1158 48.2
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 5.6e-267 924.9 848 60.8
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 6.8e-265 917.9 1121 48.7
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.2e-264 917.1 1125 48.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.5e-264 916.8 938 55.0
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 8.4e-263 911.0 893 55.4
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 5.4e-262 908.3 1136 46.2
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 7.8e-261 904.4 1189 46.4
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.9e-260 902.1 1137 49.2
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 5.6e-259 898.3 1133 47.6
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.8e-258 896.0 1001 51.7
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 6.2e-258 894.8 894 54.7
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 3.1e-257 892.5 1225 45.8
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 5.2e-257 891.7 1001 51.7
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 4.2e-254 882.1 1207 45.4
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.6e-253 880.2 874 54.3
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 9.6e-251 870.9 1224 43.9
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 4.0e-249 865.5 897 52.0
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 3.4e-248 862.4 1040 48.6
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 3.4e-248 862.4 1025 48.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 7.6e-248 861.3 992 48.5
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.7e-247 860.1 992 49.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.9e-247 859.4 1008 48.5
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 2.4e-246 856.3 899 51.2
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.2e-246 855.5 910 52.0
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 5.4e-246 855.1 1144 44.8
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 1.2e-245 854.0 1130 45.3
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 7.9e-245 851.3 996 49.1
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 7.9e-245 851.3 1152 44.7
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 7.9e-245 851.3 996 49.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 5.1e-244 848.6 1004 48.7
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 5.1e-244 848.6 1049 47.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 3.3e-243 845.9 1146 44.9
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.6e-242 843.6 1144 44.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 5.3e-241 838.6 1100 45.4
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 7.6e-240 834.7 990 48.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.7e-239 833.6 1132 44.2
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 9.3e-238 827.8 1156 44.6
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.7e-237 826.2 1009 47.4
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 2.7e-237 826.2 1145 43.9
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 4.6e-237 825.5 1076 44.7
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 8.7e-236 821.2 1024 46.8
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 8.7e-236 821.2 1002 47.0
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 7.4e-235 818.1 902 50.9
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.1e-234 816.6 1139 42.9
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 3.7e-234 815.8 1130 44.1
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 8.1e-234 814.7 640 66.7
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.4e-233 813.1 1141 42.9
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 6.9e-233 811.6 1058 45.5
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.0e-231 807.7 969 48.0
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 1.0e-231 807.7 1003 46.2
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.7e-231 807.0 1005 47.5
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 8.4e-231 804.7 977 47.6
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-230 804.3 1087 45.7
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.9e-230 803.5 650 62.3
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 3.2e-230 802.7 1110 44.2
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 3.2e-230 802.7 1095 45.7
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.2e-230 802.4 1150 43.0
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 3.9e-228 795.8 1109 43.6
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.9e-227 793.5 892 48.8
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 7.4e-227 791.6 1108 43.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.1e-225 787.7 1145 42.7
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 4.1e-225 785.8 1067 46.0
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 6.9e-225 785.0 1097 44.3
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 6.9e-225 785.0 1020 45.8
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.5e-224 782.3 1148 43.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.3e-223 780.8 1110 44.6
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.8e-220 770.4 1043 45.4
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-219 767.7 872 50.1
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 7.7e-216 755.0 1123 42.5
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.6e-213 746.1 697 56.1
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 7.9e-213 745.0 866 47.3
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 3.4e-208 729.6 1070 41.8
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 4.5e-208 729.2 1044 44.3
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 9.7e-203 711.4 626 58.6
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.3e-202 711.1 1127 41.1
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.3e-202 711.1 1127 41.1
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 2.7e-197 693.3 1016 42.0
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.3e-196 690.3 1041 43.0
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.2e-194 683.7 993 43.5
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.7e-191 674.1 994 43.4
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.8e-191 672.9 768 48.3
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 5.5e-190 669.1 1033 41.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.7e-183 647.5 925 42.2
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.0e-180 636.7 631 52.9
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.9e-174 617.5 836 44.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.6e-160 571.2 971 38.5
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 6.8e-156 555.8 307 90.9
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.2e-152 545.0 788 42.8
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.1e-142 511.9 671 45.3
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.1e-141 507.7 433 59.4
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 6.2e-141 506.1 510 54.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.0e-131 474.6 793 38.3
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-128 464.2 759 38.9
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.9e-110 404.8 284 71.1
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 7.4e-110 402.9 647 36.8
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.6e-104 384.0 649 36.2
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.0e-95 355.9 971 30.7
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.1e-92 344.4 748 35.3
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 5.3e-92 343.6 343 53.6
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 9.1e-84 316.2 318 52.8
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.2e-83 315.8 977 31.4
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 2.9e-82 311.2 977 31.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.7e-79 300.1 729 33.3
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-75 288.1 295 52.2
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.1e-65 256.1 409 36.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.8e-58 231.1 354 39.5
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 3.4e-30 138.3 489 26.0
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 7.6e-30 137.1 296 29.4
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 7.1e-28 130.6 271 34.3
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.3e-26 125.6 460 30.0
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 1.4e-23 116.3 237 32.5
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-17 96.7 237 35.9
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 8.7e-10 70.5 117 40.2
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 9.6e-09 67.0 139 37.4
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 9.6e-09 67.0 45 73.3
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.2e-06 60.1 56 51.8


User provided reference genes

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