Gene: Lsat_1_v5_gn_5_149520
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_5_149520
- Transcript Identifier Lsat_1_v5_gn_5_149520.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_5 : 283172109-283181332 : negative
Gene Family Information
- ID HOM05D005064
- #Genes/#Species 148/93
- Phylogenetic origin
- ID ORTHO05D006611
- #Genes/#Species 140/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lsat_1_v5_gn_5_149520.v5
- pacid 38967790
Descriptions
- Description K08775 - breast cancer 2 susceptibility protein (BRCA2, FANCD1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000724 | IEA | InterPro | double-strand break repair via homologous recombination | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT4G00020 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT4G00020 |
| GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | AT4G00020 |
| GO:0048314 | ISO | PLAZA Integrative Orthology | embryo sac morphogenesis | AT4G00020 |
| GO:0031347 | ISO | PLAZA Integrative Orthology | regulation of defense response | AT4G00020 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G00020 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G01630 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036758 | At5g01610-like superfamily |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR015187 | BRCA2, OB1 |
| IPR007493 | Protein of unknown function DUF538 |
| IPR036315 | BRCA2 helical domain superfamily |
| IPR015252 | Breast cancer type 2 susceptibility protein, helical domain |
| IPR015525 | Breast cancer type 2 susceptibility protein |
| Mapman id | Description |
|---|---|
| 13.3.5.4.2 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.DMC1-recruitment protein (BRCA2) |
| 14.3.2.1 | DNA damage response.homologous recombination repair (HR).BRCC DNA-damage response complex.component BRCA2 |