Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 3.4e-242 841.3 428 100.0
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 7.5e-234 813.5 428 93.7
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 3.4e-226 788.1 431 90.5
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 2.2e-225 785.4 431 89.8
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 1.4e-224 782.7 428 88.8
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 1.4e-224 782.7 428 88.8
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 1.2e-223 779.6 429 88.8
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 4.6e-223 777.7 428 88.3
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 4.6e-223 777.7 428 88.3
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 8.6e-222 773.5 427 87.8
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 8.9e-219 763.5 427 88.5
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 3.6e-212 741.5 463 80.6
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 5.3e-203 711.1 439 79.0
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 6.9e-187 657.5 439 72.2
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 7.6e-186 654.1 430 72.3
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 1.0e-185 653.7 433 74.8
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 1.3e-185 653.3 432 74.3
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 6.5e-185 651.0 436 72.2
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 8.4e-185 650.6 431 74.2
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 4.2e-184 648.3 430 71.9
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 7.1e-184 647.5 431 73.3
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 1.6e-183 646.4 435 72.9
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 1.6e-183 646.4 438 73.1
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 2.7e-183 645.6 434 72.4
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 3.5e-183 645.2 433 71.4
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 4.6e-183 644.8 429 75.1
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 7.9e-183 644.0 435 73.6
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 1.0e-182 643.7 427 73.3
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 1.0e-182 643.7 427 73.3
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 1.8e-182 642.9 431 73.3
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 2.3e-182 642.5 429 72.7
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 1.1e-181 640.2 437 72.3
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 1.5e-181 639.8 434 72.1
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 2.5e-181 639.0 432 73.4
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 4.3e-181 638.3 434 71.7
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 4.3e-181 638.3 437 70.9
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 9.7e-181 637.1 435 70.3
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 1.3e-180 636.7 433 72.1
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.6e-180 636.3 430 71.6
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 3.7e-180 635.2 432 71.8
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 6.3e-180 634.4 434 70.3
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 1.8e-179 632.9 431 70.3
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 3.1e-179 632.1 431 72.2
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 6.9e-179 630.9 439 71.1
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 2.0e-178 629.4 437 70.7
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 1.7e-177 626.3 443 70.4
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 2.2e-177 625.9 435 70.6
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 3.8e-177 625.2 430 70.5
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 3.8e-177 625.2 432 70.4
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 6.5e-177 624.4 428 70.6
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 6.5e-177 624.4 449 67.7
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 5.5e-176 621.3 430 70.0
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.2e-176 620.9 437 73.5
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 9.4e-176 620.5 433 73.0
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 9.4e-176 620.5 433 73.0
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.2e-175 620.2 437 69.6
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 1.6e-175 619.8 431 71.9
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 3.6e-175 618.6 433 72.7
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 3.6e-175 618.6 433 72.7
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 3.6e-175 618.6 433 71.6
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 7.9e-175 617.5 434 68.0
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 1.0e-174 617.1 434 69.6
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 1.8e-174 616.3 436 67.4
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 6.7e-174 614.4 441 69.6
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 1.1e-173 613.6 429 69.0
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 1.1e-173 613.6 436 69.5
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.9e-173 612.8 433 73.2
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 1.9e-173 612.8 433 73.2
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 5.7e-173 611.3 436 67.2
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 9.7e-173 610.5 437 68.9
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 9.7e-173 610.5 452 67.7
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 2.2e-172 609.4 458 67.0
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 6.3e-172 607.8 456 69.5
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 6.3e-172 607.8 445 70.6
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.1e-171 607.1 438 67.6
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 1.8e-171 606.3 436 71.8
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 3.1e-171 605.5 435 70.3
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 9.1e-171 604.0 411 71.5
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 2.6e-170 602.4 430 71.6
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 1.0e-169 600.5 438 65.8
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 1.7e-169 599.7 406 73.2
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 5.0e-169 598.2 464 67.2
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 5.0e-169 598.2 431 68.2
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 5.0e-169 598.2 431 67.7
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 8.5e-169 597.4 438 66.7
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 1.2e-167 593.6 455 68.1
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 2.7e-167 592.4 438 65.8
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 2.7e-167 592.4 436 66.1
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 3.6e-167 592.0 435 68.5
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 1.4e-166 590.1 483 62.1
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 1.4e-166 590.1 429 68.5
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 1.8e-166 589.7 431 66.4
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 1.8e-166 589.7 396 73.7
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 5.1e-166 588.2 421 67.5
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 6.7e-166 587.8 429 67.6
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 2.6e-165 585.9 442 67.0
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 7.2e-160 567.8 396 73.7
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 6.7e-158 561.2 428 65.2
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 8.8e-158 560.8 428 65.0
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 3.3e-157 558.9 428 66.8
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 4.4e-157 558.5 431 65.0
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 7.4e-157 557.8 376 71.8
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 9.7e-157 557.4 398 68.3
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 5.3e-155 551.6 442 64.3
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 2.2e-153 546.2 277 93.5
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 5.5e-152 541.6 399 67.9
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 5.5e-152 541.6 425 62.6
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 2.9e-145 519.2 444 60.1
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 1.9e-144 516.5 429 60.4
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 3.5e-138 495.7 434 57.8
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 1.3e-137 493.8 435 59.8
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 3.5e-130 469.2 427 56.4
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 3.6e-127 459.1 391 58.8
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 2.0e-125 453.4 426 54.0
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 1.1e-118 431.0 328 65.9
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 5.2e-118 428.7 434 53.0
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 1.2e-117 427.6 268 73.5
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 1.2e-114 417.5 359 56.5
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 8.6e-113 411.4 295 68.8
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 3.3e-112 409.5 365 55.6
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 5.2e-110 402.1 371 54.4
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 7.5e-109 398.3 326 60.1
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 2.1e-106 390.2 313 60.1
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 2.1e-82 310.5 240 60.8
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.7e-76 290.8 181 74.0
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 3.9e-57 226.5 356 37.9
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 9.7e-56 221.9 156 68.6
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 9.1e-46 188.7 381 33.3
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 6.3e-23 112.8 118 49.2
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 6.2e-10 69.7 38 81.6
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 5.2e-09 66.6 223 24.2
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 1.2e-08 65.5 219 24.7
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 1.5e-08 65.1 223 23.3
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.5e-08 65.1 223 23.3
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.5e-08 65.1 223 23.3
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.5e-08 65.1 223 23.3
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 2.0e-08 64.7 37 75.7
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.0e-08 64.7 223 22.9
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 2.0e-08 64.7 223 23.3
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 2.0e-08 64.7 219 24.2
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 2.6e-08 64.3 232 23.3
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 4.4e-08 63.5 224 22.8
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.3e-07 62.0 235 26.4
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 1.3e-07 62.0 262 23.3
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 1.3e-07 62.0 218 24.3
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 1.7e-07 61.6 219 22.8
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 2.2e-07 61.2 218 23.9
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 2.9e-07 60.8 219 23.3
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 2.9e-07 60.8 219 24.2
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 2.9e-07 60.8 219 23.3
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 2.9e-07 60.8 219 22.8
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 3.7e-07 60.5 224 23.2
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 4.9e-07 60.1 219 23.3
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 4.9e-07 60.1 219 23.3
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 6.4e-07 59.7 219 23.3
MELO3C030776.2 Cucumis melo HOM05D005813 ORTHO05D007310 6.4e-07 59.7 35 71.4
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 6.4e-07 59.7 219 23.3
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 8.3e-07 59.3 219 22.8
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 8.3e-07 59.3 219 22.8
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 8.3e-07 59.3 219 23.3
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 8.3e-07 59.3 219 23.3
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 1.1e-06 58.9 219 22.8
Os03g0860900 Oryza sativa ssp. japonica HOM05D000836 ORTHO05D000709 1.1e-06 58.9 254 24.0
Zm00001eb065280 Zea mays HOM05D000836 ORTHO05D000709 1.1e-06 58.9 252 23.0
MSTRG.22725 Avicennia marina HOM05D004669 ORTHO05D005767 1.4e-06 58.5 219 22.8
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 23.4
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 1.4e-06 58.5 219 23.3
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 1.4e-06 58.5 224 24.6
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 1.9e-06 58.2 219 22.4
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 2.4e-06 57.8 219 22.8
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 2.4e-06 57.8 231 24.2
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 2.4e-06 57.8 206 23.8
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 3.2e-06 57.4 219 23.3
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 3.2e-06 57.4 219 23.3
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 3.2e-06 57.4 219 23.3
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 3.2e-06 57.4 219 23.3
PRCOL_00003820 Prasinoderma coloniale HOM05D002853 ORTHO05D003030 3.2e-06 57.4 210 26.2
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 3.2e-06 57.4 219 23.7
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 5.4e-06 56.6 219 21.9
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 5.4e-06 56.6 241 23.7
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 5.4e-06 56.6 164 28.0
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 7.0e-06 56.2 219 22.8
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 7.0e-06 56.2 219 22.4
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 7.0e-06 56.2 219 22.4
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 9.2e-06 55.8 219 22.4
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 9.2e-06 55.8 219 22.4


User provided reference genes

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