Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10027057m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 4.4e-18 93.6 47 100.0
AT1G31340 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
BcaB03g13797 Brassica carinata HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
A07p09420 Brassica napus HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
C07p14490 Brassica napus HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
BolC7t41948H Brassica oleracea HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
BraA07t28737Z Brassica rapa HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
Thhalv10008986m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 2.2e-09 64.7 44 77.3
Thhalv10017351m.g Eutrema salsugineum HOM05D000218 ORTHO05D000125 1.4e-08 62.0 41 75.6
AL1G49690 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 1.8e-08 61.6 44 75.0
CARHR030810 Cardamine hirsuta HOM05D000218 ORTHO05D000125 1.8e-08 61.6 44 75.0
Sp1g27180 Schrenkiella parvula HOM05D000218 ORTHO05D000125 1.8e-08 61.6 44 75.0
CDE11G1079 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 4.1e-08 60.5 43 72.1
Os09g0420800 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 5.4e-08 60.1 40 75.0
Zm00001eb313000 Zea mays HOM05D000218 ORTHO05D000125 5.4e-08 60.1 40 75.0
Lalb_Chr25g0284781 Lupinus albus HOM05D000218 ORTHO05D000125 7.0e-08 59.7 40 75.0
THA.LOC104798542 Tarenaya hassleriana HOM05D000218 ORTHO05D000125 7.0e-08 59.7 41 75.6
Atru.chr1.124 Acer truncatum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Aa31LG9G15930 Aethionema arabicum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Aa31LG9G15950 Aethionema arabicum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Ah.15g095590 Amaranthus hybridus HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
MSTRG.13954 Avicennia marina HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
MSTRG.1623 Avicennia marina HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
EL10Ac7g18009 Beta vulgaris HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BcaB02g09405 Brassica carinata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BcaB04g18161 Brassica carinata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BcaB07g32796 Brassica carinata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BcaC02g11685 Brassica carinata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BcaC07g37764 Brassica carinata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
A05p10040 Brassica napus HOM05D000218 ORTHO05D000125 9.1e-08 59.3 43 72.1
A08p10620 Brassica napus HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BolC4t22888H Brassica oleracea HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BolC8t48150H Brassica oleracea HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
BraA05t19945Z Brassica rapa HOM05D000218 ORTHO05D000125 9.1e-08 59.3 43 72.1
BraA08t33061Z Brassica rapa HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
CANSAT80G1892 Cannabis sativa HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Carub.0001s2979 Capsella rubella HOM05D000218 ORTHO05D000125 9.1e-08 59.3 44 72.7
Carub.0004s1735 Capsella rubella HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
CAN.G492.74 Capsicum annuum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
CAN.G943.49 Capsicum annuum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
CARHR129860 Cardamine hirsuta HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
AUR62001215 Chenopodium quinoa HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
AUR62022110 Chenopodium quinoa HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
ECA238G0145 Erigeron canadensis HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
ECA247G0404 Erigeron canadensis HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Migut.A00400 Erythranthe guttata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Migut.E01435 Erythranthe guttata HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
HanXRQChr04g0115051 Helianthus annuus HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
HanXRQChr14g0439841 Helianthus annuus HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Oeu019708.3 Olea europaea HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Oeu051684.1 Olea europaea HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Os06g0650100 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
PSO063G0129 Papaver somniferum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
PSO832G3215 Papaver somniferum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
PGR031G2854 Punica granatum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Sp4g17880 Schrenkiella parvula HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Solyc10g005560.3 Solanum lycopersicum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Sopen10g001540 Solanum pennellii HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
PGSC0003DMG400011242 Solanum tuberosum HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
THA.LOC104814371 Tarenaya hassleriana HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Zm00001eb349470 Zea mays HOM05D000218 ORTHO05D000125 9.1e-08 59.3 39 76.9
Potri.005G096700 Populus trichocarpa HOM05D000218 ORTHO05D000125 1.6e-07 58.5 32 81.2
RcHm_v2.0_Chr3g0478171 Rosa chinensis HOM05D000218 ORTHO05D000125 1.6e-07 58.5 29 89.7
RcHm_v2.0_Chr3g0483791 Rosa chinensis HOM05D000218 ORTHO05D000125 1.6e-07 58.5 29 89.7
HPP92_021987 Vanilla planifolia HOM05D000218 ORTHO05D000125 1.6e-07 58.5 40 72.5
Ah.01g007720 Amaranthus hybridus HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
CDE01G0644 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
CDE12G0717 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Ciclev10006134m.g Citrus clementina HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Ciclev10013001m.g Citrus clementina HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
COL.COLO4_12148 Corchorus olitorius HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Duzib187G0508 Durio zibethinus HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Duzib264G0762 Durio zibethinus HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Eucgr.F04448 Eucalyptus grandis HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Gohir.A05G381200 Gossypium hirsutum HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Gohir.A05G381300 Gossypium hirsutum HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Gohir.D04G034100 Gossypium hirsutum HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Gohir.D04G034200 Gossypium hirsutum HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Gorai.012G038400 Gossypium raimondii HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Gorai.N024300 Gossypium raimondii HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Hma1.2p1_0539F.1_g174610 Hydrangea macrophylla HOM05D000218 ORTHO05D000125 2.0e-07 58.2 32 84.4
Manes.18G096100 Manihot esculenta HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Nn3g18630 Nelumbo nucifera HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Thecc.01G145100 Theobroma cacao HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
TWI34G0170 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 2.0e-07 58.2 39 74.4
Aqoxy3G03025 Aquilegia oxysepala HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
arahy.Tifrunner.gnm1.ann1.CRR2EY Arachis hypogaea HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
arahy.Tifrunner.gnm1.ann1.FWH2UP Arachis hypogaea HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
arahy.Tifrunner.gnm1.ann1.SN0HF9 Arachis hypogaea HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
arahy.Tifrunner.gnm1.ann1.UIM2NE Arachis hypogaea HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
CAN.G1041.28 Capsicum annuum HOM05D000218 ORTHO05D000125 2.7e-07 57.8 29 89.7
Glyma.08G168200 Glycine max HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Glyma.15G259200 Glycine max HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Lj3g0027838 Lotus japonicus HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Lalb_Chr01g0015841 Lupinus albus HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Medtr5g092700 Medicago truncatula HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
PSO675G0099 Papaver somniferum HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Phvul.005G060100 Phaseolus vulgaris HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Psat7g175520 Pisum sativum HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
VMungo1080G1823 Vigna mungo HOM05D000218 ORTHO05D000125 2.7e-07 57.8 39 74.4
Zm00001eb275020 Zea mays HOM05D000218 ORTHO05D000125 2.7e-07 57.8 29 89.7
C08p36800 Brassica napus HOM05D000147 ORTHO05D011672 3.5e-07 57.4 33 78.8
CsaV3_6G013580 Cucumis sativus L. HOM05D000218 ORTHO05D000125 3.5e-07 57.4 30 83.3
Actinidia07372 Actinidia chinensis HOM05D000218 ORTHO05D000125 5.9e-07 56.6 34 79.4
MBI16_g26725_MAGBIO Magnolia biondii HOM05D000218 ORTHO05D000125 5.9e-07 56.6 29 86.2
Actinidia12773 Actinidia chinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
AL4G31710 Arabidopsis lyrata HOM05D000218 ORTHO05D000125 7.7e-07 56.2 39 74.4
AT2G35635 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 7.7e-07 56.2 39 74.4
CSS0010167 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
CSS0027193 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
CSS0049196 Camellia sinensis var. sinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
CiPaw.11G062900 Carya illinoinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Cc05_g16280 Coffea canephora HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Cc09_g03100 Coffea canephora HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
MELO3C019642.2 Cucumis melo HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
FvH4_6g21361 Fragaria vesca HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Lj1C911T2 Lonicera japonica HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
MD14G1049000 Malus domestica HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Medtr4g073580 Medicago truncatula HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Prupe.7G086300 Prunus persica HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
QL04p080254 Quercus lobata HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
QL04p080296 Quercus lobata HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Rhsim06G0241500 Rhododendron simsii HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
RcHm_v2.0_Chr3g0477981 Rosa chinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
RcHm_v2.0_Chr3g0478131 Rosa chinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
RcHm_v2.0_Chr3g0478371 Rosa chinensis HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Sed0000650 Sechium edule HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
Sed0028077 Sechium edule HOM05D000218 ORTHO05D000125 7.7e-07 56.2 29 86.2
MSTRG.25817 Avicennia marina HOM05D000218 ORTHO05D000125 1.0e-06 55.8 39 71.8
BolC9t58278H Brassica oleracea HOM05D000147 ORTHO05D011672 1.0e-06 55.8 33 75.8
Mapoly0008s0043 Marchantia polymorpha HOM05D000218 ORTHO05D000125 1.0e-06 55.8 30 80.0
SEGI_37235 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 1.0e-06 55.8 40 67.5
SGA_v2.0_scaffold169G38595 Striga asiatica HOM05D000218 ORTHO05D000125 1.0e-06 55.8 39 71.8
TWI53G1552 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 1.0e-06 55.8 39 71.8
BcaB02g11117 Brassica carinata HOM05D000218 ORTHO05D000125 1.3e-06 55.5 33 78.8
GSVIVG01036803001 Vitis vinifera HOM05D000218 ORTHO05D000125 1.3e-06 55.5 31 80.6
MD10G1205300 Malus domestica HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
Manes.02G185300 Manihot esculenta HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
Potri.002G062500 Populus trichocarpa HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
Potri.005G198700 Populus trichocarpa HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
Potri.007G067500 Populus trichocarpa HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
Sabra05G0079400 Salix brachista HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
Sabra05G0151300 Salix brachista HOM05D000218 ORTHO05D000125 1.7e-06 55.1 29 82.8
COL.COLO4_07010 Corchorus olitorius HOM05D000218 ORTHO05D000125 2.2e-06 54.7 29 82.8
FvH4_3g15350 Fragaria vesca HOM05D000218 ORTHO05D000125 2.2e-06 54.7 29 82.8
Lalb_Chr20g0108601 Lupinus albus HOM05D000218 ORTHO05D000125 2.2e-06 54.7 29 82.8
MD12G1050500 Malus domestica HOM05D000218 ORTHO05D000125 2.2e-06 54.7 29 82.8
Pp3c16_3920 Physcomitrium patens HOM05D000218 ORTHO05D000125 2.2e-06 54.7 29 82.8
RcHm_v2.0_Chr5g0025791 Rosa chinensis HOM05D000218 ORTHO05D000125 2.2e-06 54.7 29 82.8
ATR0307G007 Amborella trichopoda HOM05D000218 ORTHO05D000125 2.9e-06 54.3 51 54.9
C09p54080 Brassica napus HOM05D000628 ORTHO05D011672 2.9e-06 54.3 33 75.8
SEGI_08116 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 2.9e-06 54.3 34 70.6
BraA06t26285Z Brassica rapa HOM05D000628 ORTHO05D011672 3.8e-06 53.9 33 72.7
MCO15G078 Micromonas commoda HOM05D000218 ORTHO05D000125 3.8e-06 53.9 31 77.4
Pp3c25_14180 Physcomitrium patens HOM05D000218 ORTHO05D000125 3.8e-06 53.9 30 76.7
RcHm_v2.0_Chr4g0426431 Rosa chinensis HOM05D000218 ORTHO05D000125 3.8e-06 53.9 31 77.4
BcaC04g19583 Brassica carinata HOM05D000443 ORTHO05D001278 5.0e-06 53.5 33 72.7
Duzib213G0121 Durio zibethinus HOM05D000218 ORTHO05D000125 5.0e-06 53.5 29 79.3
QL05p048335 Quercus lobata HOM05D000218 ORTHO05D000125 5.0e-06 53.5 31 74.2
SMO115G0084 Selaginella moellendorffii HOM05D000218 ORTHO05D000125 5.0e-06 53.5 29 79.3
Thecc.07G168600 Theobroma cacao HOM05D000218 ORTHO05D000125 5.0e-06 53.5 29 79.3
Thecc.07G169000 Theobroma cacao HOM05D000218 ORTHO05D000125 5.0e-06 53.5 29 79.3
RcHm_v2.0_Chr3g0478541 Rosa chinensis HOM05D000218 ORTHO05D000125 8.5e-06 52.8 29 79.3
TWI73G0402 Tripterygium wilfordii HOM05D000218 ORTHO05D000125 8.5e-06 52.8 29 79.3


User provided reference genes

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