Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 9.3e-284 979.5 500 100.0
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 2.2e-261 905.2 512 90.6
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 9.3e-260 899.8 512 90.0
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 4.3e-257 891.0 512 89.3
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 6.3e-256 887.1 512 88.7
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 8.2e-256 886.7 504 88.1
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-255 885.9 504 88.1
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 3.1e-255 884.8 504 87.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 8.5e-253 876.7 507 87.4
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 1.0e-250 869.8 503 86.9
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 3.9e-250 867.8 503 86.5
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.2e-246 856.3 503 86.3
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.2e-246 856.3 503 86.3
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 3.7e-232 808.1 516 80.6
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.8e-215 752.7 501 79.2
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 2.2e-208 729.2 517 72.0
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 4.0e-194 681.8 459 72.8
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 8.9e-194 680.6 455 73.6
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 3.4e-193 678.7 457 74.6
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.5e-193 677.6 457 74.6
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 8.3e-192 674.1 457 74.4
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 5.4e-191 671.4 481 70.5
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.2e-190 670.2 484 70.5
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 1.6e-190 669.8 490 70.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 3.5e-190 668.7 441 73.0
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 1.3e-189 666.8 441 73.0
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 2.3e-189 666.0 466 71.2
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 6.6e-189 664.5 436 74.5
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.1e-188 663.7 501 69.1
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 1.1e-188 663.7 440 73.4
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 7.3e-188 661.0 484 70.0
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.5e-188 660.6 449 72.6
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 3.6e-187 658.7 455 72.3
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.7e-187 658.3 498 67.1
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 8.1e-187 657.5 450 72.4
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.1e-186 657.1 431 74.0
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 3.1e-186 655.6 472 70.3
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 1.2e-185 653.7 499 67.9
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.2e-185 653.7 531 65.5
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 1.5e-185 653.3 450 72.0
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.0e-185 652.9 442 72.2
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.6e-185 652.5 455 72.1
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 4.4e-185 651.7 432 74.3
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 5.8e-185 651.4 435 74.9
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 9.9e-185 650.6 492 68.7
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 9.9e-185 650.6 513 66.9
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.3e-184 650.2 466 71.2
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 1.7e-184 649.8 503 67.0
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 1.7e-184 649.8 440 74.5
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 2.2e-184 649.4 440 72.7
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 2.2e-184 649.4 429 73.7
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.9e-184 649.0 503 66.6
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 4.9e-184 648.3 507 66.9
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 6.4e-184 647.9 449 71.9
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 8.3e-184 647.5 442 71.7
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 8.3e-184 647.5 499 67.3
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 1.4e-183 646.7 477 69.2
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 1.4e-183 646.7 454 71.8
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 1.4e-183 646.7 444 72.1
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 2.4e-183 646.0 481 68.6
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 5.4e-183 644.8 513 66.3
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 9.2e-183 644.0 447 71.1
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.1e-182 642.9 437 71.9
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.1e-182 642.9 437 71.9
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 2.7e-182 642.5 444 71.6
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 3.5e-182 642.1 492 66.9
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 1.0e-181 640.6 466 69.3
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 1.7e-181 639.8 464 69.6
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 1.7e-181 639.8 459 70.4
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 3.9e-181 638.6 431 73.1
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 5.1e-181 638.3 457 70.2
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 8.6e-181 637.5 493 65.5
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.1e-180 637.1 494 67.2
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 1.5e-180 636.7 492 67.3
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.5e-180 636.0 483 67.7
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 4.3e-180 635.2 427 73.8
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 7.3e-180 634.4 494 66.8
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 9.5e-180 634.0 476 67.9
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.2e-179 633.6 427 75.4
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.2e-179 633.6 489 67.3
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 8.1e-179 630.9 476 67.9
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 1.4e-178 630.2 497 65.0
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 2.4e-178 629.4 424 72.9
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 3.1e-178 629.0 433 71.6
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 5.2e-178 628.2 524 63.7
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 9.9e-177 624.0 499 64.7
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.2e-176 622.9 437 72.3
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 4.9e-176 621.7 434 71.2
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 1.1e-175 620.5 456 68.2
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 4.2e-175 618.6 445 69.7
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 7.1e-175 617.8 471 66.2
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.7e-174 615.9 434 70.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.7e-173 613.2 443 68.4
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 5.1e-173 611.7 438 70.1
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 6.6e-173 611.3 472 66.3
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.1e-172 610.5 444 68.0
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 1.5e-172 610.1 520 60.6
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 5.6e-172 608.2 437 70.0
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.2e-171 607.1 431 71.5
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 8.1e-171 604.4 509 62.9
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 4.0e-170 602.1 442 67.6
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.5e-169 600.1 485 63.5
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 3.4e-169 599.0 457 66.5
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 5.8e-169 598.2 429 69.9
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 3.0e-165 585.9 438 65.1
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 1.2e-161 573.9 453 63.6
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.4e-159 566.2 450 62.4
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 1.0e-157 560.8 437 62.7
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 5.1e-157 558.5 442 65.4
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 8.2e-147 524.6 483 55.9
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 5.7e-140 501.9 453 58.3
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.8e-138 496.9 374 65.2
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 4.1e-138 495.7 447 56.2
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.2e-134 484.2 311 75.2
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 9.7e-132 474.6 522 48.3
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 4.8e-131 472.2 442 59.3
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.1e-130 471.1 455 56.7
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.9e-127 460.3 483 50.3
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 5.7e-124 448.7 425 58.1
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.6e-113 413.3 259 82.2
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.3e-109 400.2 455 50.8
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 3.1e-106 389.8 396 57.8
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.0e-96 358.2 233 72.5
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 5.4e-82 309.3 426 40.1
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 3.0e-80 303.5 274 56.2
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.1e-79 301.6 386 48.2
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 2.8e-78 297.0 466 44.8
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 3.6e-78 296.6 228 71.1
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 8.1e-62 242.3 422 35.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.3e-59 235.0 450 33.1
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-58 231.9 167 71.3
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 3.2e-58 230.3 174 64.9
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 1.7e-51 208.0 387 37.5
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.9e-42 177.9 171 56.7
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 3.5e-41 173.7 132 71.2
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.7e-30 137.1 96 64.6
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 7.9e-25 119.4 101 61.4
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.5e-23 115.2 131 50.4
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.3e-22 112.1 91 63.7
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.1e-21 109.0 66 77.3
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 9.4e-18 95.9 73 78.1
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 2.7e-17 94.4 57 78.9
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 3.6e-17 94.0 72 62.5
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 5.7e-15 86.7 49 83.7
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 5.7e-15 86.7 49 83.7
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 5.7e-15 86.7 86 54.7
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 3.1e-13 80.9 64 62.5


User provided reference genes

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