Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 0.0e+00 2542.3 1444 100.0
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 1900.2 1366 81.9
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 0.0e+00 1899.0 1368 81.5
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 0.0e+00 1894.0 1375 80.2
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 0.0e+00 1889.4 1370 81.0
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 0.0e+00 1886.3 1365 80.3
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1885.2 1366 81.0
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 0.0e+00 1872.8 1365 79.3
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1836.6 1387 79.5
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 1830.1 1389 79.3
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1790.8 1365 77.6
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1790.8 1365 77.6
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 1783.1 1371 77.2
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 1782.7 1365 77.4
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1776.5 1366 76.7
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1749.6 1261 78.0
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 0.0e+00 1707.2 1385 73.5
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 0.0e+00 1449.5 1183 69.5
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1288.1 1163 66.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 1.8e-300 1036.6 1451 49.9
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 2.6e-294 1016.1 1423 46.8
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 4.9e-293 1011.9 1456 49.6
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 3.0e-290 1002.7 1439 49.3
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 4.7e-288 995.3 1436 48.8
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.1e-284 984.2 1430 47.7
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.4e-284 983.8 1436 47.5
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.9e-284 983.4 1411 46.8
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.2e-284 982.6 1419 50.7
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.6e-283 978.8 1412 50.6
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.3e-281 972.6 1450 47.0
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 4.3e-281 972.2 1455 47.4
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 5.2e-279 965.3 1431 49.9
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.3e-277 960.7 1442 46.1
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.4e-276 957.2 1427 48.9
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.7e-275 953.0 1432 47.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.3e-273 946.0 1444 46.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 4.3e-273 945.7 1435 45.5
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 1.2e-272 944.1 1434 47.4
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 1.6e-272 943.7 1369 50.9
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.6e-272 943.7 1451 45.4
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.1e-271 941.0 1454 46.6
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.8e-269 932.6 1442 47.7
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 2.4e-268 929.9 1444 46.0
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 2.4e-268 929.9 1408 45.3
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 5.4e-268 928.7 1427 46.0
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 6.0e-267 925.2 1419 47.9
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 7.8e-267 924.9 1417 46.2
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.3e-266 924.1 1420 47.9
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 1.7e-266 923.7 1438 47.3
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 6.6e-266 921.8 1416 45.8
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.3e-265 919.5 1474 47.2
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.2e-264 917.5 1477 47.3
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 4.7e-264 915.6 1409 45.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 1.3e-261 907.5 1484 45.7
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.2e-261 906.7 1403 46.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 3.8e-261 906.0 1500 45.4
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.5e-259 899.4 1411 46.1
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 1.1e-257 894.4 1421 45.1
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 7.3e-257 891.7 1422 46.9
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 6.2e-256 888.6 1416 45.8
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 8.1e-256 888.3 1418 45.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 1.1e-255 887.9 1431 45.8
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 5.3e-255 885.6 1422 46.3
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.3e-253 880.9 1407 45.6
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 5.4e-252 875.5 1417 46.3
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 2.3e-250 870.2 1428 46.6
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 3.3e-249 866.3 1428 45.7
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 5.3e-247 859.0 1429 44.9
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 6.9e-247 858.6 1411 45.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 6.9e-247 858.6 1405 45.8
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.2e-246 857.8 1404 45.9
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 2.0e-246 857.1 1425 46.4
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 1.7e-245 854.0 1388 44.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.5e-243 846.3 1206 47.7
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 6.0e-243 845.5 1451 44.9
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 3.0e-242 843.2 1213 50.1
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 8.7e-242 841.6 1409 45.0
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 3.7e-240 836.3 1430 45.9
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 5.8e-238 828.9 1409 43.5
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.4e-236 824.3 1220 44.7
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 2.1e-235 820.5 1430 45.3
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 4.6e-235 819.3 1266 48.1
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.1e-231 808.1 1427 43.0
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 6.9e-231 805.4 1558 41.1
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 9.0e-231 805.1 1377 44.7
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 3.0e-226 790.0 1209 45.2
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.5e-225 787.7 1421 41.7
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.4e-220 771.2 1446 44.7
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 4.2e-220 769.6 1471 42.9
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.9e-219 765.4 1146 44.8
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.8e-218 764.2 1399 42.7
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 3.9e-218 763.1 1155 46.1
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.6e-211 740.0 1392 40.4
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 5.7e-209 732.6 1036 45.8
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 5.3e-207 726.1 1529 41.1
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 7.7e-206 722.2 951 47.6
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 5.0e-205 719.5 1521 41.2
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 7.5e-201 705.7 899 47.9
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 5.3e-199 699.5 1415 41.5
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 6.5e-197 692.6 783 54.2
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.0e-194 683.3 1279 41.0
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 4.4e-193 679.9 1400 40.6
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.9e-189 667.2 1147 41.5
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.5e-188 664.8 1394 42.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 7.2e-188 662.5 1430 38.7
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 5.6e-180 636.3 1277 40.9
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 2.3e-178 630.9 1413 40.1
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.5e-177 625.9 1140 46.1
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.2e-174 618.6 1385 37.4
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.9e-168 597.4 1406 39.5
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 2.4e-167 594.3 823 46.7
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.9e-165 587.0 938 43.3
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.6e-164 583.2 1063 44.7
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 1.4e-159 568.5 1179 37.6
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.0e-153 548.1 1011 39.9
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.2e-152 544.7 1127 38.8
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.9e-140 505.0 1422 34.7
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 2.1e-139 501.5 1206 37.5
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 3.1e-138 497.7 758 48.0
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-132 478.8 802 42.5
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.3e-132 477.2 1112 35.0
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.6e-115 422.2 538 49.1
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 4.8e-115 420.6 1237 34.9
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 1.7e-112 412.1 1293 33.8
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 8.8e-101 373.2 1423 31.2
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 7.0e-98 363.6 1426 30.2
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 5.0e-96 357.5 955 38.2
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.2e-89 336.3 1271 30.6
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 8.0e-86 323.6 1439 29.7
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 7.5e-84 317.0 317 53.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.3e-82 310.8 472 42.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 5.7e-76 290.8 1229 29.5
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.1e-62 245.7 485 40.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.8e-62 245.4 392 41.1
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 9.2e-58 230.3 1105 28.3
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 3.5e-57 228.4 866 29.3
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.8e-57 227.3 1155 29.3
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 3.0e-56 225.3 866 28.2
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.5e-55 222.2 1038 27.9
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 3.4e-52 211.8 136 79.4
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.4e-50 205.7 370 36.8
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.1e-50 204.9 1065 29.1
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.6e-46 193.0 900 25.8
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 1.6e-46 193.0 443 36.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.0e-45 188.3 197 51.8
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 5.2e-45 188.0 317 37.9
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 4.4e-44 184.9 209 52.2
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.9e-43 181.4 209 48.3
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 6.4e-43 181.0 1029 27.5
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 5.4e-42 177.9 226 46.5
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 8.6e-40 170.6 983 26.9
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.1e-39 170.2 181 50.8
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.1e-38 166.0 401 33.9
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.7e-35 156.4 1062 25.2
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 1.4e-34 153.3 615 36.4
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 3.5e-33 148.7 377 34.2
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.3e-31 142.1 683 27.2
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 9.9e-28 130.6 1010 23.8
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.9e-27 129.0 689 25.7
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 3.8e-27 128.6 91 72.5
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 8.4e-27 127.5 968 23.3
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.1e-22 112.8 346 35.3
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 3.6e-22 112.1 912 22.8
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 9.0e-21 107.5 120 49.2
BolC4t25858H Brassica oleracea HOM05D001675 ORTHO05D001808 1.2e-20 107.1 102 61.8
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.2e-20 107.1 876 24.5
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 5.8e-20 104.8 172 32.0
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 5.8e-20 104.8 266 48.5
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 4.2e-18 98.6 1180 21.7
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 2.7e-17 95.9 98 50.0
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.0e-16 92.4 129 38.8
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 3.9e-16 92.0 82 54.9
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 8.7e-16 90.9 206 37.4
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 6.2e-14 84.7 85 54.1
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.4e-13 83.6 88 50.0
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 2.4e-13 82.8 86 45.3
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.1e-13 82.4 129 46.5
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 6.0e-09 68.2 258 34.1
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.0e-08 67.4 69 53.6


User provided reference genes

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