Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 3.2e-119 431.8 221 100.0
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 8.1e-115 417.2 221 96.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.8e-114 416.0 221 96.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 4.0e-114 414.8 221 95.5
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.0e-114 414.8 221 95.9
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.0e-114 414.8 221 95.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 5.3e-114 414.5 221 95.9
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 5.3e-114 414.5 221 96.4
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-113 412.9 221 95.5
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 2.0e-113 412.5 221 95.5
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.4e-113 411.8 221 95.9
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.7e-112 409.5 221 94.6
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 6.4e-112 407.5 229 92.6
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.4e-111 405.6 222 92.8
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.2e-111 404.8 235 90.2
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 2.7e-110 402.1 222 92.8
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 3.5e-110 401.7 222 92.8
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.5e-108 396.4 222 92.3
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.8e-98 362.8 221 83.7
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.0e-93 347.1 219 79.0
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 3.0e-77 292.4 219 65.8
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.5e-73 280.0 219 63.5
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.0e-72 277.3 219 63.9
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-71 273.9 219 62.1
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.9e-71 273.1 218 64.7
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.2e-71 272.3 219 64.4
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 9.4e-71 270.8 219 63.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.2e-70 270.4 219 62.6
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 3.6e-70 268.9 219 61.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 6.1e-70 268.1 220 62.3
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 7.9e-70 267.7 218 64.7
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.4e-69 266.9 220 61.8
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 6.7e-69 264.6 222 62.2
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.1e-68 263.8 206 66.5
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.5e-68 263.5 214 63.6
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.0e-68 263.1 216 63.0
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 3.3e-68 262.3 219 61.6
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.7e-68 261.5 219 61.2
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 5.7e-68 261.5 223 61.9
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-67 259.6 219 60.7
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 62.6
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 4.8e-67 258.5 220 60.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 4.8e-67 258.5 218 61.9
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.1e-66 257.3 219 62.1
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.4e-66 256.9 218 61.9
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-66 256.5 219 59.8
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-66 256.5 219 59.8
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-66 256.5 219 59.8
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.8e-66 256.5 248 56.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-66 256.1 219 59.8
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-66 256.1 219 59.8
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.1e-66 255.8 218 61.9
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-66 254.6 219 59.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-66 254.6 219 59.4
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-65 253.4 219 59.4
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.0e-65 253.1 222 60.4
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.7e-64 250.0 220 59.5
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.9e-64 249.2 218 61.0
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.1e-63 247.3 224 61.6
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.2e-63 245.7 221 57.9
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 9.4e-63 244.2 218 60.6
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.2e-62 243.8 219 58.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.0e-62 241.1 194 62.4
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 1.4e-61 240.4 220 56.8
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 5.2e-61 238.4 222 58.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 5.2e-61 238.4 219 58.9
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 3.3e-60 235.7 222 56.3
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.3e-60 235.7 222 56.8
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 3.3e-60 235.7 197 61.4
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 3.3e-60 235.7 224 57.1
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.4e-60 235.3 218 56.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 4.4e-60 235.3 213 60.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 5.7e-60 235.0 218 58.3
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 5.7e-60 235.0 199 62.3
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 5.7e-60 235.0 224 57.1
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 7.5e-60 234.6 226 56.2
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.3e-59 233.8 217 56.7
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.3e-59 233.8 193 63.2
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.3e-59 233.8 190 65.3
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.7e-59 233.4 208 61.1
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.7e-59 233.4 218 56.9
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.7e-59 233.4 220 55.0
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.2e-59 233.0 197 61.4
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 2.8e-59 232.6 226 55.8
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.7e-59 232.3 203 60.6
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 3.7e-59 232.3 218 55.5
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.1e-58 230.7 218 59.2
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.4e-58 230.3 214 56.5
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.4e-58 230.3 218 55.5
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.4e-58 230.3 222 55.9
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.8e-58 229.9 218 57.8
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 3.1e-58 229.2 219 55.7
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 4.1e-58 228.8 224 55.8
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 7.0e-58 228.0 193 63.2
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.6e-57 226.9 214 56.1
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 2.0e-57 226.5 201 60.2
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.7e-57 226.1 224 54.5
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 7.7e-57 224.6 218 56.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.7e-56 223.4 189 62.4
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.7e-56 223.4 231 55.4
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 3.8e-56 222.2 212 57.1
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-56 221.9 218 56.0
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 8.5e-56 221.1 232 52.2
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 5.5e-55 218.4 204 57.4
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 5.5e-55 218.4 255 50.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.0e-53 214.2 216 54.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.0e-53 212.6 252 50.8
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.0e-53 212.6 192 60.9
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.0e-53 212.2 164 66.5
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 5.2e-53 211.8 185 60.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.2e-52 210.7 125 88.8
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.2e-52 210.7 218 51.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.5e-52 210.3 235 51.5
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 7.5e-52 208.0 230 50.4
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.8e-51 205.3 220 51.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 9.1e-50 201.1 206 53.9
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.9e-47 193.4 264 44.3
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.2e-47 192.6 216 51.9
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 3.0e-45 186.0 195 53.3
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 3.0e-45 186.0 196 54.6
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 3.4e-44 182.6 341 36.4
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.3e-43 180.6 192 54.2
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 4.9e-43 178.7 155 65.8
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 4.1e-42 175.6 250 44.0
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-40 169.5 154 59.1
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.3e-39 165.6 146 58.9
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.6e-39 165.2 145 60.7
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 7.3e-39 164.9 137 67.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 2.8e-38 162.9 141 66.0
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.0e-37 161.0 173 54.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.0e-36 156.8 134 61.2
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.7e-35 153.7 171 52.0
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 5.9e-33 145.2 168 53.0
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.5e-31 137.9 143 54.5
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 8.0e-30 134.8 96 75.0
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.0e-29 132.5 95 65.3
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 7.8e-25 118.2 181 39.8
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.1e-22 110.2 178 36.5
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.8e-22 109.8 180 37.2
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 4.0e-21 105.9 116 50.9
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.7e-19 100.5 136 44.9
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 2.9e-19 99.8 91 57.1
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.7e-17 93.2 183 33.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 3.5e-17 92.8 151 41.7
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.3e-15 85.1 60 60.0
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 8.1e-14 81.6 96 46.9
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 6.8e-13 78.6 99 44.4
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.7e-11 73.9 50 70.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 4.1e-10 69.3 59 55.9
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 6.0e-09 65.5 146 34.9
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.3e-08 63.5 179 31.8


User provided reference genes

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