Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.5e-200 702.6 341 100.0
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.0e-181 639.0 342 90.9
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 7.2e-179 630.6 341 89.7
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 9.4e-179 630.2 341 88.9
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.0e-177 625.2 338 88.5
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 5.2e-177 624.4 344 88.4
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 3.3e-176 621.7 339 88.5
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 3.3e-176 621.7 339 88.5
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 5.7e-176 620.9 339 88.2
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.7e-175 619.4 339 87.9
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.3e-175 617.5 341 88.0
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.1e-174 615.1 339 88.2
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 7.0e-174 614.0 340 88.2
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.5e-171 606.3 341 88.0
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.9e-171 605.9 341 88.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.5e-171 605.5 340 87.6
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 7.7e-165 583.9 385 77.4
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 6.5e-164 580.9 345 82.3
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.7e-156 556.2 344 77.9
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.2e-138 496.9 358 66.8
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.1e-133 479.6 357 64.1
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.7e-132 476.5 345 64.1
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.5e-131 472.6 359 63.2
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 3.3e-131 472.2 357 64.4
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 7.3e-131 471.1 359 63.5
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.1e-130 469.5 361 64.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 3.6e-130 468.8 343 64.4
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.1e-130 467.6 347 62.5
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.1e-129 467.2 351 64.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.1e-129 467.2 363 62.3
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 6.8e-129 464.5 359 62.1
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 6.8e-129 464.5 347 62.2
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.9e-129 464.2 347 62.2
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 8.9e-129 464.2 343 63.3
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 4.4e-128 461.8 352 64.5
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 7.6e-128 461.1 359 61.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 9.9e-128 460.7 359 62.4
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.7e-127 459.9 356 62.1
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.7e-127 459.9 342 62.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.7e-127 459.9 356 61.5
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.9e-127 459.1 364 59.6
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 3.7e-127 458.8 357 62.5
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 6.4e-127 458.0 363 61.2
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 6.4e-127 458.0 336 64.0
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 8.4e-127 457.6 363 61.7
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 8.4e-127 457.6 355 60.8
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.4e-126 456.8 355 61.7
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.4e-126 456.8 343 61.8
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.4e-126 456.1 356 61.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.1e-126 455.3 347 61.7
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.2e-125 453.8 338 63.0
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.6e-125 453.4 358 61.7
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 2.1e-125 453.0 345 60.3
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.6e-125 451.8 365 60.5
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 6.0e-125 451.4 368 62.0
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 6.0e-125 451.4 363 60.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 6.0e-125 451.4 343 61.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.0e-124 449.1 362 61.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 3.0e-124 449.1 360 60.6
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.0e-124 449.1 356 61.5
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 6.6e-124 448.0 355 62.0
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 8.6e-124 447.6 355 59.2
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.6e-123 444.9 359 59.9
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.8e-122 442.6 334 64.4
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.8e-122 442.6 351 60.4
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 6.2e-122 441.4 351 60.1
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.4e-121 440.3 350 61.4
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.4e-121 439.5 360 59.7
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 2.4e-121 439.5 345 61.7
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 2.4e-121 439.5 354 60.5
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 3.1e-121 439.1 340 61.5
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 6.8e-121 438.0 359 59.6
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.0e-120 436.4 403 53.8
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 8.4e-119 431.0 350 60.3
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.9e-118 429.9 320 64.4
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.9e-118 429.9 356 56.7
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.2e-118 429.1 361 57.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 7.1e-118 427.9 369 56.6
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.1e-118 427.9 354 59.6
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.1e-118 427.9 354 59.6
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.1e-117 426.4 356 60.1
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.3e-116 422.9 353 57.2
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 5.1e-116 421.8 369 56.1
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.3e-115 419.1 370 56.5
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 3.3e-115 419.1 342 59.6
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 3.3e-115 419.1 353 60.1
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 5.6e-115 418.3 425 52.5
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 6.2e-114 414.8 433 49.9
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 3.4e-112 409.1 485 46.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 9.9e-112 407.5 321 62.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.5e-109 399.1 352 55.7
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 3.0e-108 396.0 359 54.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 5.6e-107 391.7 293 62.8
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 7.4e-107 391.3 344 55.5
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.1e-105 387.5 247 70.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.5e-104 383.6 363 51.8
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 9.3e-102 374.4 363 54.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.2e-101 374.0 290 60.3
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 2.1e-101 373.2 364 48.4
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 4.3e-99 365.5 357 54.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.7e-98 362.5 359 52.1
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 4.0e-97 359.0 384 48.2
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 7.6e-96 354.8 353 52.7
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 9.3e-94 347.8 348 51.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.9e-92 342.4 317 55.5
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.7e-90 335.9 246 65.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 4.2e-86 322.4 421 39.9
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.6e-85 320.5 294 56.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.1e-85 320.1 209 69.9
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-80 303.5 208 66.8
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 9.4e-78 294.7 285 52.6
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 4.6e-77 292.4 415 38.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 7.9e-77 291.6 343 43.7
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.9e-76 289.3 378 40.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.6e-75 286.6 158 78.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 4.2e-70 269.2 189 75.7
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.6e-67 260.0 344 42.7
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.7e-61 240.0 132 79.5
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.0e-60 236.1 129 77.5
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 4.4e-59 232.6 227 54.6
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 4.0e-52 209.5 243 45.7
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 4.0e-52 209.5 243 45.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.4e-41 173.7 185 48.1
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 2.4e-41 173.7 184 48.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.2e-37 161.4 93 77.4
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.6e-37 161.0 123 54.5
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 8.0e-37 158.7 152 55.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 3.7e-26 123.2 75 73.3
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 9.5e-22 108.6 234 32.9
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 4.7e-21 106.3 128 43.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.2e-19 101.7 85 56.5
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.6e-16 91.3 85 50.6
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.0e-07 60.5 102 37.3


User provided reference genes

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