Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 2.3e-96 355.5 174 100.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-87 326.2 185 88.6
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-87 326.2 185 88.6
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-87 326.2 185 88.6
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-87 326.2 185 88.6
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-87 326.2 185 88.6
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 2.5e-87 325.5 185 88.6
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-87 325.1 185 88.1
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 5.6e-87 324.3 185 88.1
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 7.4e-87 323.9 185 88.1
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 9.6e-87 323.6 185 88.1
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 9.6e-87 323.6 185 88.1
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 9.6e-87 323.6 185 88.1
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 4.8e-86 321.2 182 88.5
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-82 308.9 184 84.2
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.6e-81 306.2 185 83.8
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.7e-81 305.4 185 83.8
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 3.0e-80 302.0 182 83.5
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.3e-79 298.5 185 82.2
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.3e-79 298.5 185 82.2
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 4.3e-79 298.1 185 82.2
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 7.4e-79 297.4 185 81.6
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 9.6e-79 297.0 185 81.6
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.1e-77 293.5 170 87.6
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.4e-77 292.4 171 84.2
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 3.1e-77 292.0 185 80.0
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 3.1e-77 292.0 185 80.0
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.6e-76 288.9 171 83.6
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 3.4e-76 288.5 185 79.5
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.4e-76 288.5 185 80.0
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.0e-75 287.0 185 79.5
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-75 283.9 185 78.4
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-75 283.9 185 78.4
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-75 283.9 185 78.4
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-75 283.9 185 78.4
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-75 283.9 185 78.4
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-75 283.9 185 78.4
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.1e-74 283.5 185 78.4
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 2.5e-74 282.3 185 79.5
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 9.3e-74 280.4 185 78.9
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 9.3e-74 280.4 185 78.9
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.3e-72 275.8 171 81.3
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.3e-72 275.8 171 81.3
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.3e-70 267.7 171 79.5
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 5.3e-69 264.6 171 78.4
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 5.3e-69 264.6 171 78.4
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 2.1e-65 252.7 185 73.0
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 3.6e-65 251.9 185 71.4
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 1.8e-64 249.6 174 75.3
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 6.7e-64 247.7 174 74.7
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 4.8e-62 241.5 141 85.1
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-59 233.0 120 95.0
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-59 233.0 120 95.0
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.9e-59 232.3 185 66.5
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.1e-58 230.3 119 94.1
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.1e-57 224.6 182 66.5
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.0e-56 222.2 158 72.8
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.1e-55 220.3 182 65.9
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-55 219.9 170 66.5
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.7e-55 218.0 182 65.9
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.4e-53 213.4 127 81.9
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 3.1e-53 212.2 159 72.3
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-52 209.1 120 84.2
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-52 209.1 120 84.2
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-52 209.1 120 84.2
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 2.6e-52 209.1 175 65.1
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.9e-52 208.0 164 67.7
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 7.7e-52 207.6 118 84.7
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.3e-51 206.8 120 85.8
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.7e-51 206.5 117 83.8
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 1.7e-51 206.5 119 84.0
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.1e-50 203.8 120 82.5
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.2e-49 200.3 185 61.6
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 3.6e-49 198.7 117 82.1
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.6e-49 198.7 120 81.7
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 4.7e-49 198.4 133 75.2
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 1.0e-48 197.2 120 80.8
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 3.3e-47 192.2 113 82.3
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-47 191.8 120 79.2
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 9.7e-47 190.7 139 71.9
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 2.8e-46 189.1 176 63.1
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 4.1e-45 185.3 194 51.0
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.6e-44 183.3 119 74.8
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 2.5e-42 176.0 112 77.7
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.2e-42 175.6 174 56.3
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 4.2e-42 175.3 129 69.0
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 7.2e-42 174.5 127 72.4
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 9.4e-42 174.1 98 87.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.7e-41 172.6 98 86.7
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.7e-41 171.8 175 58.3
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 4.7e-41 171.8 97 88.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.4e-40 170.2 97 86.6
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.4e-40 170.2 97 86.6
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.4e-40 170.2 115 72.2
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.8e-40 169.9 119 69.7
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.3e-40 169.5 98 82.7
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.3e-40 169.5 96 86.5
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 5.2e-40 168.3 178 44.9
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 8.8e-40 167.5 94 88.3
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 8.8e-40 167.5 99 82.8
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.5e-39 166.8 94 84.0
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.5e-39 166.8 95 83.2
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.5e-39 166.8 95 83.2
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 2.0e-39 166.4 94 88.3
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.0e-39 166.4 106 79.2
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 2.6e-39 166.0 94 87.2
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.4e-39 165.2 95 82.1
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 4.4e-39 165.2 97 82.5
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.4e-39 165.2 113 71.7
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 7.5e-39 164.5 141 63.1
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 7.5e-39 164.5 98 79.6
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-38 162.9 171 53.8
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.8e-38 162.5 96 85.4
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.8e-38 161.8 95 80.0
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 8.2e-38 161.0 184 45.7
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.1e-37 160.6 188 50.0
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 2.4e-37 159.5 95 81.1
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 2.4e-37 159.5 165 57.6
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 7.0e-37 157.9 120 70.0
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.2e-36 157.1 187 49.7
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 1.6e-36 156.8 90 82.2
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 4.5e-36 155.2 110 74.5
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 5.9e-36 154.8 89 82.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-35 154.1 94 80.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.5e-35 151.4 87 87.4
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 7.2e-34 147.9 122 63.9
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 9.4e-34 147.5 94 74.5
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 2.1e-33 146.4 94 76.6
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.7e-33 146.0 120 62.5
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 3.6e-33 145.6 81 90.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.7e-33 145.2 86 82.6
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 1.2e-31 140.6 104 67.3
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.7e-31 138.3 92 75.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 9.8e-31 137.5 89 74.2
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 6.3e-30 134.8 98 72.4
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 9.1e-29 131.0 174 43.7
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.0e-24 117.5 70 80.0
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.0e-24 115.9 70 78.6
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.0e-24 115.9 70 78.6
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.0e-24 115.9 70 78.6
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.0e-24 115.9 70 78.6
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.0e-24 115.9 70 78.6
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.0e-24 115.5 69 79.7
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.0e-24 115.5 69 79.7
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.0e-24 115.5 69 79.7
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.0e-24 115.5 69 79.7
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.0e-24 115.5 69 79.7
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.4e-23 112.5 166 44.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 4.4e-23 112.1 96 61.5
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 9.8e-23 110.9 64 90.6
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 9.8e-23 110.9 125 52.0
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 5.4e-21 105.1 64 84.4
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 4.5e-20 102.1 62 82.3
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 7.8e-20 101.3 62 80.6
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 7.8e-20 101.3 61 83.6
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 7.8e-20 101.3 100 56.0
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 1.7e-19 100.1 72 69.4
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 1.9e-18 96.7 58 82.8
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.6e-18 95.1 122 48.4
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 5.6e-18 95.1 70 64.3
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.1e-17 93.2 53 83.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.1e-17 93.2 53 83.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 6.1e-17 91.7 55 81.8
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 6.1e-17 91.7 75 60.0
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 8.0e-17 91.3 48 89.6
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.3e-16 89.7 92 52.2
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 7.5e-15 84.7 81 60.5
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 7.5e-15 84.7 88 56.8
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 4.9e-14 82.0 90 51.1
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 8.3e-14 81.3 56 69.6
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-13 80.9 60 65.0
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 1.8e-13 80.1 49 81.6
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 2.4e-13 79.7 59 71.2
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 5.4e-13 78.6 75 58.7
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.2e-12 77.4 44 79.5
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 2.0e-12 76.6 147 37.4
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.9e-10 70.1 49 69.4
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 3.3e-10 69.3 49 71.4
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.2e-09 67.4 47 74.5
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.8e-08 63.5 107 43.0
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.8e-08 63.5 36 86.1
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 2.3e-08 63.2 33 90.9
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 5.8e-07 58.5 36 83.3
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 2.2e-06 56.6 29 86.2
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 2.2e-06 56.6 36 69.4


User provided reference genes

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