Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.6e-233 811.2 410 100.0
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.1e-226 789.6 410 96.1
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-226 789.3 410 95.6
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.5e-226 789.3 410 95.9
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 3.2e-226 788.1 410 96.1
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 3.2e-226 788.1 410 95.9
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.8e-224 782.3 410 95.6
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 3.4e-223 778.1 410 94.4
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-222 776.2 410 95.6
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-222 776.2 414 94.2
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.3e-222 776.2 410 95.6
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.7e-222 775.8 410 94.4
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 7.0e-221 770.4 410 94.6
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.6e-217 759.2 406 93.8
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.1e-217 758.8 410 93.4
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 9.2e-213 743.4 385 97.4
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.9e-211 738.0 410 90.5
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.1e-209 732.3 410 88.8
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 8.6e-203 710.3 410 86.6
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.5e-202 708.8 410 86.3
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.5e-202 708.8 410 87.1
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 9.5e-202 706.8 412 86.2
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.2e-201 706.4 411 86.4
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.1e-201 705.7 408 87.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.7e-201 704.5 411 86.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 4.7e-201 704.5 410 86.6
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.1e-200 703.4 413 86.9
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.0e-200 701.4 411 86.4
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 6.8e-200 700.7 412 85.2
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.2e-199 699.9 412 85.0
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.2e-199 699.9 411 85.4
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.5e-199 699.5 411 85.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.6e-199 698.7 411 85.6
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 3.4e-199 698.4 411 86.1
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 5.8e-199 697.6 414 84.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 2.9e-198 695.3 412 85.0
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 3.7e-198 694.9 412 86.2
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 4.9e-198 694.5 412 85.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 4.9e-198 694.5 411 85.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.1e-197 693.3 415 86.3
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.1e-197 693.3 411 87.1
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.4e-197 693.0 412 84.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.9e-197 692.6 411 84.9
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 4.1e-197 691.4 410 84.9
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 4.1e-197 691.4 412 84.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.4e-197 691.0 415 84.3
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.6e-196 689.5 407 84.8
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.7e-196 688.7 412 84.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.5e-196 688.3 412 84.0
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.5e-196 688.3 410 83.9
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.6e-196 688.0 418 83.3
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 6.0e-196 687.6 408 84.8
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 6.0e-196 687.6 410 84.6
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 7.8e-196 687.2 412 83.7
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.0e-195 686.8 410 83.4
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-195 686.4 409 84.4
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.7e-195 686.0 410 84.1
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.7e-195 686.0 429 82.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 3.9e-195 684.9 422 82.2
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 3.9e-195 684.9 409 84.1
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 3.9e-195 684.9 410 83.2
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.1e-195 684.5 409 84.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 5.1e-195 684.5 417 83.0
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 8.6e-195 683.7 413 84.3
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.9e-194 682.6 409 83.9
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.3e-194 681.8 413 83.8
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.3e-194 681.4 411 84.4
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 4.3e-194 681.4 411 84.4
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 5.6e-194 681.0 410 83.7
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 5.6e-194 681.0 409 83.9
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 9.5e-194 680.2 410 84.9
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.2e-193 679.9 412 84.0
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.2e-193 679.9 411 84.2
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 2.8e-193 678.7 414 83.1
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 8.1e-193 677.2 413 82.6
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.1e-192 676.8 412 83.7
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.8e-192 676.0 412 82.3
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.1e-192 675.2 410 84.1
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 6.8e-192 674.1 414 83.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.2e-191 673.3 420 81.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.5e-191 672.9 412 82.8
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.0e-191 672.5 412 82.0
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 2.0e-191 672.5 410 82.9
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.6e-191 672.2 411 82.7
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.6e-191 672.2 416 82.9
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 2.6e-191 672.2 376 88.8
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.4e-191 671.4 408 83.3
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.8e-191 671.0 412 82.0
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 5.8e-191 671.0 412 82.0
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 2.9e-190 668.7 421 81.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 4.9e-190 667.9 410 83.9
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.1e-189 666.8 387 86.0
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.4e-189 666.4 410 82.2
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.4e-189 666.4 410 82.2
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.4e-189 665.6 424 81.4
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 4.1e-189 664.8 412 80.1
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.2e-188 663.3 416 82.2
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 1.2e-188 663.3 413 80.6
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.2e-188 663.3 431 80.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.5e-188 661.8 410 82.0
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.0e-187 660.2 357 89.1
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 6.6e-187 657.5 411 82.2
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.1e-186 656.8 409 81.2
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.5e-186 656.4 382 84.8
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 3.3e-186 655.2 359 89.7
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 3.3e-186 655.2 382 84.0
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 4.0e-184 648.3 333 94.6
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.5e-178 629.0 375 84.3
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 4.3e-178 628.2 410 80.7
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.8e-177 624.8 353 84.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.4e-176 622.5 362 81.8
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.4e-175 618.6 359 81.1
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.1e-172 609.4 357 81.5
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.8e-172 607.4 413 75.5
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 3.9e-163 578.6 342 85.4
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 9.0e-160 567.4 406 72.9
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 3.3e-154 548.9 326 87.4
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 4.3e-154 548.5 342 84.2
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 3.8e-150 535.4 357 72.5
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.9e-147 525.4 376 67.6
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.9e-146 523.1 323 82.7
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.5e-146 522.7 407 70.3
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.2e-142 509.6 274 89.1
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 2.1e-140 503.1 349 68.8
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.1e-140 503.1 313 81.8
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.4e-136 489.6 300 84.3
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.2e-134 483.0 357 67.2
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 6.7e-131 471.5 369 61.8
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.1e-130 470.7 293 82.6
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 7.2e-125 451.4 248 87.9
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.1e-117 427.6 285 76.5
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.1e-116 423.3 287 75.3
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.8e-104 383.6 238 76.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-97 360.9 322 61.8
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.0e-66 257.3 132 94.7
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-66 256.9 132 93.9
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 6.4e-57 225.7 395 37.0
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-49 201.1 104 96.2
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 8.4e-49 198.7 118 79.7
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-48 198.4 103 96.1
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.1e-48 198.4 103 96.1
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.9e-48 197.6 118 78.8
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 4.0e-43 179.9 94 94.7
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.1e-37 161.8 101 79.2
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.0e-33 148.7 105 78.1
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.3e-32 142.1 94 73.4
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.2e-26 125.2 125 56.8
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.8e-25 120.2 100 65.0
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.6e-23 114.8 71 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-22 111.7 59 88.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 6.3e-20 102.8 81 66.7
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 8.2e-20 102.4 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.3e-19 99.8 59 83.1
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.3e-17 95.1 62 72.6
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 7.2e-08 62.8 86 53.5
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.0e-06 57.0 53 58.5


User provided reference genes

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