Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 0.0e+00 1126.3 570 100.0
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.0e-295 1016.9 570 90.7
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-277 957.6 580 85.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 7.6e-274 946.8 576 85.6
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 7.6e-274 946.8 576 85.6
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 7.6e-274 946.8 576 85.6
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 7.1e-272 940.3 572 86.4
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 1.7e-270 935.6 576 84.5
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.9e-269 932.2 576 84.5
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.1e-268 928.7 602 80.7
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.4e-267 925.2 588 83.3
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.7e-263 911.8 572 84.4
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.0e-254 883.2 572 81.5
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.8e-238 829.3 580 76.6
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.8e-227 792.7 568 72.0
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.6e-226 789.6 568 71.8
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.0e-225 784.6 569 71.4
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 4.2e-224 781.6 568 71.3
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.0e-222 775.4 568 71.5
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 4.0e-222 775.0 570 71.6
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 7.5e-221 770.8 570 70.7
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.7e-220 769.6 566 71.7
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 6.3e-220 767.7 568 70.2
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.1e-219 765.4 560 70.7
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 5.3e-219 764.6 574 70.9
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 5.9e-218 761.1 551 72.4
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 5.9e-218 761.1 577 70.2
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 2.9e-217 758.8 562 72.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.9e-217 758.8 564 71.1
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.9e-217 758.8 560 70.7
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 8.5e-217 757.3 564 70.9
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.9e-216 756.1 564 70.6
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.2e-216 755.4 567 70.5
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 4.2e-216 755.0 569 69.8
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.5e-216 754.6 562 71.9
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.2e-215 753.4 572 69.2
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.2e-215 753.4 574 69.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 8.0e-215 750.7 561 69.9
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 8.0e-215 750.7 570 69.1
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 3.0e-214 748.8 564 70.4
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 4.0e-214 748.4 577 69.0
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 5.2e-214 748.0 555 70.8
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 6.8e-214 747.7 562 71.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 8.8e-214 747.3 572 69.1
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 2.0e-213 746.1 569 67.3
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.0e-213 746.1 563 70.3
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.6e-213 745.7 562 69.9
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 2.6e-213 745.7 573 69.6
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.4e-213 745.3 571 69.2
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 7.5e-213 744.2 568 69.5
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.3e-212 743.4 579 69.3
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.3e-212 743.4 573 68.2
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.2e-212 742.7 563 70.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.8e-212 742.3 561 70.1
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.8e-212 742.3 574 69.3
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.7e-212 741.9 567 70.2
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 6.3e-212 741.1 568 69.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 8.3e-212 740.7 579 69.1
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.4e-211 740.0 572 69.1
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 4.1e-211 738.4 570 68.1
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 7.0e-211 737.6 570 68.6
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 7.0e-211 737.6 570 69.3
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.2e-210 736.9 573 68.6
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.7e-210 735.7 570 68.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 9.4e-208 727.2 571 68.1
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.6e-207 726.5 570 67.0
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.1e-207 724.5 572 67.1
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.3e-206 722.6 572 67.0
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.2e-206 721.5 572 66.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.8e-206 721.1 572 66.8
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 6.8e-206 721.1 577 67.1
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.6e-205 719.2 577 67.1
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 3.4e-205 718.8 568 67.8
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.4e-203 713.4 566 66.4
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 2.4e-203 712.6 570 67.0
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 3.1e-203 712.2 573 66.3
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 5.4e-203 711.4 555 67.6
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.6e-202 709.9 548 67.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.6e-202 709.9 556 68.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-201 706.8 599 63.8
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.6e-201 704.1 561 66.5
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.5e-200 703.4 666 60.5
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.5e-200 702.6 532 69.7
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.5e-200 702.6 585 63.9
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 5.6e-200 701.4 569 65.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 3.6e-199 698.7 589 65.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.0e-198 697.2 563 67.9
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 3.0e-198 695.7 536 68.5
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.2e-195 685.6 619 61.6
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.7e-193 679.9 570 64.4
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 9.5e-192 674.1 582 65.3
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 9.5e-192 674.1 538 66.4
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.6e-191 673.3 573 63.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.8e-191 672.5 572 63.6
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 3.6e-191 672.2 516 70.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 4.7e-191 671.8 564 64.2
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 6.0e-186 654.8 500 69.0
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.9e-184 649.8 550 63.5
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.2e-183 647.1 538 63.2
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.2e-183 647.1 489 68.1
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.1e-183 646.4 720 52.2
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.4e-181 638.6 535 63.4
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.4e-181 638.6 574 62.0
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 4.9e-180 635.2 515 69.9
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 4.9e-180 635.2 515 69.9
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 4.9e-180 635.2 515 69.9
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.3e-174 616.3 575 60.3
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.7e-169 600.1 549 61.9
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.3e-169 599.7 565 60.4
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.2e-164 583.2 491 62.7
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 5.3e-158 562.0 417 70.5
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 3.4e-157 559.3 536 58.4
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.7e-138 496.5 380 69.7
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.0e-132 475.7 562 52.8
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 1.6e-130 470.7 602 49.2
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 3.0e-121 439.9 482 55.0
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.4e-112 408.7 259 84.2
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-105 387.1 348 60.9
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 3.1e-102 376.7 262 73.7
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-84 318.5 285 64.9
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 2.9e-79 300.4 238 66.0
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 7.0e-78 295.8 365 51.5
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 7.3e-75 285.8 335 53.4
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 4.9e-71 273.1 191 72.3
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.2e-69 268.5 552 37.5
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 4.6e-69 266.5 163 81.0
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 6.6e-68 262.7 156 83.3
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 4.6e-61 240.0 165 75.8
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 3.8e-55 220.3 419 37.5
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.6e-53 213.4 194 60.3
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 6.0e-53 213.0 428 39.0
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 9.0e-49 199.1 167 62.3
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.3e-47 195.3 134 72.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 4.3e-43 180.3 179 57.5
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 1.4e-41 175.3 187 52.4
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-38 164.9 151 61.6
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 2.4e-38 164.5 581 30.3
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.2e-38 164.1 112 77.7
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-37 161.8 108 75.0
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 2.3e-36 157.9 160 56.2
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 2.5e-35 154.5 160 56.9
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 6.2e-26 123.2 113 59.3
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 6.2e-26 123.2 68 86.8
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 4.9e-23 113.6 75 74.7
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.6e-21 108.6 58 89.7
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 3.3e-19 100.9 129 44.2
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 5.3e-17 93.6 184 34.8
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.0e-16 91.7 106 49.1
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.7e-15 88.6 66 71.2
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.9e-15 87.8 77 62.3
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.6e-13 82.0 85 49.4
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.8e-12 78.6 63 69.8
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.8e-10 71.2 57 66.7
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 4.1e-09 67.4 83 38.6
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 4.5e-08 63.9 49 69.4
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.5e-06 57.0 68 51.5


User provided reference genes

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