Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 1.1e-267 926.0 458 100.0
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 2.2e-247 858.6 457 92.1
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 1.4e-241 839.3 473 89.6
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 4.0e-233 811.2 458 86.9
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 2.2e-231 805.4 458 86.5
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 3.9e-228 794.7 458 86.5
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 9.5e-227 790.0 458 85.2
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.8e-226 788.5 460 86.1
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 8.1e-226 786.9 460 85.7
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 4.4e-224 781.2 458 84.3
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 4.4e-224 781.2 458 84.3
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.9e-223 778.5 458 83.6
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 2.4e-222 775.4 450 84.9
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 1.3e-220 769.6 443 85.3
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 2.3e-220 768.8 458 83.6
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 6.6e-220 767.3 442 84.8
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 6.6e-220 767.3 458 82.1
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.1e-219 766.5 458 83.4
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.5e-219 765.4 444 84.0
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 7.3e-219 763.8 460 84.1
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 7.3e-219 763.8 441 85.0
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 5.2e-217 757.7 458 81.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 5.2e-217 757.7 458 82.1
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 3.4e-216 755.0 470 79.6
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 4.4e-216 754.6 462 81.4
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 6.4e-215 750.7 459 81.7
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.1e-214 750.0 458 80.8
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 3.2e-214 748.4 458 80.6
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 5.4e-214 747.7 482 79.3
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 1.6e-213 746.1 457 81.6
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 9.6e-211 736.9 458 80.3
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 2.8e-210 735.3 466 79.2
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 9.0e-209 730.3 458 80.1
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 1.5e-208 729.6 441 81.4
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.0e-208 729.2 498 75.3
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 2.2e-207 725.7 458 78.8
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 2.2e-207 725.7 458 77.7
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 2.2e-207 725.7 456 78.5
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 2.9e-207 725.3 458 79.0
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 3.8e-207 724.9 442 80.8
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 8.4e-207 723.8 458 79.0
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 3.2e-206 721.8 462 78.8
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 7.1e-206 720.7 455 79.8
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.7e-205 718.8 462 78.6
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 2.7e-205 718.8 458 78.6
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 4.6e-205 718.0 458 78.6
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 6.0e-205 717.6 461 79.0
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 1.3e-204 716.5 441 80.5
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 3.9e-204 714.9 458 78.2
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 1.1e-203 713.4 443 79.5
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 1.1e-203 713.4 445 79.3
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 2.5e-203 712.2 558 67.9
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 7.4e-203 710.7 480 75.8
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 9.6e-203 710.3 447 79.6
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 1.6e-202 709.5 448 79.2
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 6.2e-202 707.6 465 76.8
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 4.0e-201 704.9 451 78.0
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 3.8e-199 698.4 451 77.6
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 1.3e-196 689.9 458 75.1
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 1.8e-196 689.5 446 76.7
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 6.7e-196 687.6 382 85.9
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 8.7e-196 687.2 452 76.8
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 1.1e-195 686.8 524 67.7
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 8.1e-194 680.6 463 75.2
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 8.1e-194 680.6 456 75.2
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 5.3e-193 677.9 471 73.7
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.2e-192 676.8 463 74.9
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 3.4e-192 675.2 464 75.0
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 1.7e-191 672.9 447 75.4
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 4.2e-190 668.3 480 72.5
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 1.2e-189 666.8 480 72.3
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.2e-189 666.8 388 82.7
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 3.5e-189 665.2 454 74.0
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 4.6e-189 664.8 480 72.1
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 7.9e-189 664.1 458 74.7
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 2.3e-188 662.5 407 80.1
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 1.9e-187 659.4 547 65.4
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 5.3e-185 651.4 394 79.9
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 5.3e-185 651.4 432 75.7
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 2.0e-184 649.4 443 72.0
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 5.9e-184 647.9 456 74.6
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 1.0e-183 647.1 443 72.5
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 2.9e-183 645.6 446 73.3
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 2.5e-179 632.5 458 69.2
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.6e-178 629.8 367 82.0
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 2.5e-174 615.9 456 68.6
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 1.6e-173 613.2 397 76.6
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 9.7e-171 604.0 437 69.3
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 2.2e-170 602.8 377 78.8
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 1.4e-166 590.1 461 67.7
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 9.4e-166 587.4 588 55.6
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 2.3e-164 582.8 473 65.8
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 3.0e-164 582.4 514 62.5
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 1.2e-160 570.5 499 63.5
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 6.1e-157 558.1 380 75.0
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 8.8e-156 554.3 438 64.4
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 2.9e-151 539.3 382 69.4
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.5e-147 526.9 448 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 2.8e-146 522.7 448 59.8
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 3.5e-144 515.8 413 63.7
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 1.8e-137 493.4 270 85.9
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 3.3e-118 429.5 308 70.5
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 2.7e-104 383.3 252 76.2
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.4e-92 344.4 273 64.1
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 1.9e-89 334.0 412 46.4
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 3.4e-83 313.2 221 75.6
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 8.4e-82 308.5 172 84.9
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.3e-74 284.6 179 77.1
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 3.2e-73 280.0 181 77.3
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.4e-68 264.6 166 77.1
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 5.1e-63 246.1 143 83.2
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 7.4e-62 242.3 167 73.1
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 3.8e-58 229.9 377 40.1
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 3.8e-58 229.9 353 39.7
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 3.0e-55 220.3 108 90.7
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 2.2e-50 204.1 154 69.5
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.2e-50 204.1 199 55.8
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 4.2e-49 199.9 217 53.0
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 2.4e-44 184.1 182 58.8
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.0e-38 164.5 109 69.7
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.4e-36 157.5 167 57.5
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 1.7e-26 124.8 66 83.3
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 2.0e-22 111.3 264 30.7
TAR625G1023 Trochodendron aralioides HOM05D006110 ORTHO05D007774 6.8e-07 59.7 79 50.6


User provided reference genes

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