Gene: AT5G09860
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G09860
- Transcript Identifier AT5G09860.1
- Gene Type Coding gene
- Location Chr5 : 3066815-3070733 : positive
Gene Family Information
- ID HOM05D006110
- #Genes/#Species 129/93
- Phylogenetic origin
- ID ORTHO05D007774
- #Genes/#Species 127/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G09860.1
- symbol THO1
- uniprot Q93VM9
Descriptions
- Description nuclear matrix protein-like protein
- Computational description THO1; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032784 | IBA | Gene Ontology | regulation of DNA-templated transcription, elongation | 1 |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0031047 | IMP | Gene Ontology | gene silencing by RNA | 2 |
| GO:0051028 | IEA | GOA Database | mRNA transport | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0006952 | IEA | GOA Database | defense response | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006406 | IMP IBA | Gene Ontology | mRNA export from nucleus | 1 3 |
| GO:0009873 | IGI | Gene Ontology | ethylene-activated signaling pathway | 4 |
| GO:0050832 | IMP | Gene Ontology | defense response to fungus | 3 |
| GO:0010267 | IMP | Gene Ontology | production of ta-siRNAs involved in RNA interference | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 3 |
| GO:0000445 | IBA | Gene Ontology | THO complex part of transcription export complex | 1 |
| GO:0005622 | IGI | Gene Ontology | intracellular anatomical structure | 4 |
| GO:0000347 | IDA | Gene Ontology | THO complex | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR021861 | THO complex, subunit THOC1 |
| Mapman id | Description |
|---|---|
| 16.10.1.1.1 | RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC1/HPR1 |