Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 6.1e-132 474.2 241 100.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 2.6e-98 362.5 203 88.7
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 4.3e-93 345.1 228 78.1
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-89 332.4 204 81.9
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.4e-89 331.3 204 81.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.4e-89 331.3 204 81.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-88 329.7 204 80.9
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-88 329.7 204 80.9
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-88 329.7 204 80.9
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-88 329.7 204 80.9
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.4e-88 328.2 204 80.4
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.1e-88 327.8 204 80.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.1e-88 327.8 204 80.4
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-87 326.6 204 80.4
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 4.0e-83 312.0 205 77.1
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 5.8e-82 308.1 205 75.6
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.2e-81 306.2 205 73.7
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.6e-79 300.1 204 75.0
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 6.0e-79 298.1 204 74.5
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 2.3e-78 296.2 204 73.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.0e-78 295.8 204 72.5
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.1e-78 295.0 205 70.2
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.6e-78 294.3 197 75.6
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.3e-77 292.4 204 72.1
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 3.3e-77 292.4 204 72.1
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 3.3e-77 292.4 208 73.1
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 8.1e-76 287.7 205 71.7
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.1e-75 285.8 208 71.6
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 5.2e-75 285.0 205 70.7
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 5.2e-75 285.0 206 71.8
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.8e-75 284.6 205 70.7
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.2e-74 283.9 205 69.8
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.3e-73 280.4 213 68.1
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 4.9e-73 278.5 210 69.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.1e-72 277.3 208 70.2
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.4e-72 276.9 206 67.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.4e-72 276.9 204 69.6
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 4.2e-72 275.4 201 68.7
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 3.5e-71 272.3 207 68.1
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.8e-71 271.2 165 80.6
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 7.8e-71 271.2 208 67.8
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.0e-70 270.8 208 68.8
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.3e-70 270.4 199 68.3
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.7e-70 270.0 234 62.4
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.3e-70 269.6 207 66.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.0e-70 269.2 208 67.3
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 3.9e-70 268.9 208 67.8
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 6.6e-70 268.1 206 66.5
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 6.6e-70 268.1 204 70.1
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.5e-69 266.9 207 67.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.5e-69 266.9 206 66.0
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.5e-69 266.9 208 66.8
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 3.3e-69 265.8 207 65.7
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.3e-69 265.8 207 64.3
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.3e-69 265.8 208 67.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 4.3e-69 265.4 208 65.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 4.3e-69 265.4 208 66.3
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 5.6e-69 265.0 208 71.2
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 5.6e-69 265.0 210 66.7
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.6e-69 265.0 208 66.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 7.3e-69 264.6 208 65.4
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.3e-68 263.8 208 66.8
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.8e-67 260.0 207 64.3
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.8e-67 260.0 207 63.8
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 4.0e-67 258.8 205 65.4
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.0e-67 258.8 205 64.4
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 4.0e-67 258.8 205 64.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.0e-67 258.8 205 64.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 6.9e-67 258.1 205 64.9
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 6.9e-67 258.1 204 69.1
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 9.0e-67 257.7 207 63.3
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 9.0e-67 257.7 208 69.2
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.2e-66 257.3 205 64.9
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-66 256.9 205 63.9
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.5e-66 256.9 205 64.9
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.5e-66 256.9 205 63.9
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.5e-66 256.9 205 65.4
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 5.8e-66 255.0 205 64.9
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.3e-65 253.8 208 67.3
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.7e-65 253.4 210 65.7
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 3.8e-65 252.3 204 65.7
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 3.8e-65 252.3 204 67.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.9e-65 251.9 204 66.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 6.4e-65 251.5 213 62.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.9e-64 250.0 203 65.0
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 4.2e-64 248.8 204 66.7
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.2e-63 247.3 205 67.8
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.2e-63 247.3 205 65.4
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 2.7e-63 246.1 204 62.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 4.6e-63 245.4 204 64.7
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.6e-63 245.4 219 60.7
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 4.6e-63 245.4 185 67.6
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.0e-62 244.2 204 63.2
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 3.9e-62 242.3 209 62.7
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.1e-62 241.9 152 79.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 8.7e-62 241.1 206 64.1
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.1e-61 240.7 210 62.9
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.5e-61 239.6 203 66.0
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 7.4e-61 238.0 210 62.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.6e-60 236.9 185 69.7
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.6e-60 236.9 169 74.0
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.8e-60 236.1 217 57.1
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 4.8e-60 235.3 204 63.7
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.2e-60 235.0 190 68.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.3e-59 231.9 215 60.9
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 2.6e-58 229.6 215 60.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.4e-58 229.2 215 60.0
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.2e-57 226.5 224 59.8
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.8e-57 225.7 250 52.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.8e-57 225.7 138 86.2
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 4.9e-57 225.3 240 58.3
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.4e-56 223.0 208 59.6
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.6e-55 220.3 203 61.1
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.6e-55 218.8 208 59.6
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.6e-55 218.8 203 61.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 7.9e-55 218.0 215 60.9
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 6.7e-54 214.9 261 53.3
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.5e-53 213.8 242 52.5
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-52 209.1 132 79.5
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.4e-51 207.2 331 39.6
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 9.0e-51 204.5 199 58.8
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.0e-50 203.4 190 61.1
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.0e-50 203.4 194 58.8
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 5.8e-50 201.8 168 64.3
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.5e-48 195.3 182 59.3
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.4e-43 180.6 256 45.3
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.7e-41 173.7 137 68.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 5.0e-41 172.2 199 52.8
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.9e-40 170.2 133 66.9
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 7.2e-40 168.3 134 68.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 2.7e-39 166.4 123 70.7
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.3e-37 159.5 144 61.1
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 7.4e-37 158.3 166 57.2
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 9.7e-37 157.9 153 58.8
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.5e-33 145.2 96 79.2
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.7e-31 139.8 94 71.3
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.3e-25 120.9 194 40.7
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.6e-23 114.0 112 58.9
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.6e-23 112.8 165 39.4
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.0e-22 111.3 176 38.6
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 5.7e-21 105.5 150 46.7
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 7.4e-21 105.1 91 59.3
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 8.2e-20 101.7 152 42.1
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 1.1e-19 101.3 201 33.8
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.1e-19 99.8 94 56.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.5e-18 96.3 97 53.6
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.7e-15 86.7 59 71.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 2.2e-12 77.0 139 38.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.1e-11 72.8 53 60.4
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.5e-08 63.5 171 33.3
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 4.2e-08 62.8 55 63.6
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.0e-06 58.2 40 67.5
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 3.0e-06 56.6 155 27.7


User provided reference genes

Program Settings