Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 7.1e-107 390.6 194 100.0
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.5e-104 382.9 194 96.9
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 4.8e-103 377.9 194 95.4
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 4.8e-103 377.9 194 95.4
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 4.8e-103 377.9 194 95.4
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 2.5e-99 365.5 194 90.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 2.5e-99 365.5 194 89.7
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 4.2e-99 364.8 194 90.7
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 9.3e-99 363.6 194 90.7
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 2.1e-98 362.5 194 89.2
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.5e-98 361.7 194 89.7
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 7.9e-98 360.5 194 88.7
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 2.3e-97 359.0 194 88.1
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 2.3e-97 359.0 193 88.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 3.0e-97 358.6 194 88.7
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 87.1
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.9e-96 355.9 194 87.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 88.1
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.7e-96 354.4 194 87.6
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 5.7e-96 354.4 194 86.6
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 87.1
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 87.6
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 86.6
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 85.1
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 6.3e-95 350.9 194 86.1
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 86.6
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 87.1
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 86.1
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 84.5
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 86.1
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 85.1
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 5.3e-94 347.8 194 84.5
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 84.5
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 85.1
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 85.1
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.7e-92 342.8 194 85.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 83.0
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 82.5
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 83.0
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 83.0
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 82.5
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.1e-91 340.1 187 85.6
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.1e-91 340.1 200 81.0
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 84.5
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 83.0
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.0
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 82.5
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.6e-90 336.3 194 81.4
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 82.5
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 81.4
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 81.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.4e-89 333.2 195 82.6
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 81.4
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 81.4
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.4
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 81.4
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 6.7e-89 330.9 225 73.8
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 79.4
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 79.9
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 1.1e-88 330.1 214 75.2
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.0e-88 329.3 194 78.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.4
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 78.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 79.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 79.4
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 79.4
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 5.7e-88 327.8 235 70.6
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.2e-87 325.9 194 78.9
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.7e-87 325.1 214 73.4
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 4.8e-87 324.7 194 79.9
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 78.9
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 78.9
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 78.9
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 8.2e-87 323.9 214 73.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.4e-86 323.2 210 74.3
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 78.4
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 78.4
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 78.4
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 9.1e-86 320.5 194 77.8
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.0e-84 317.0 178 82.0
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.0e-84 317.0 193 79.8
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 1.3e-84 316.6 188 78.7
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.2e-84 315.8 194 77.3
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 3.2e-83 312.0 187 77.5
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 9.4e-83 310.5 174 83.9
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.6e-82 309.7 194 77.3
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.4e-81 306.6 176 82.4
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 3.0e-81 305.4 210 72.4
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 6.7e-81 304.3 297 55.9
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.1e-80 303.5 194 75.3
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.5e-80 303.1 194 70.1
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.6e-80 302.4 194 71.6
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 3.3e-80 302.0 161 88.8
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 7.4e-80 300.8 194 71.6
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.3e-79 300.1 194 75.3
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 4.1e-78 295.0 195 68.7
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 9.1e-78 293.9 194 69.1
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 6.5e-76 287.7 274 57.3
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 1.6e-74 283.1 283 55.5
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 6.7e-73 277.7 162 80.9
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.1e-72 276.9 172 73.3
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.5e-72 276.6 160 81.2
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.9e-59 233.0 120 90.8
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.2e-58 230.3 120 89.2
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 6.1e-58 228.0 137 79.6
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 2.7e-53 212.6 178 57.3
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.5e-53 211.8 130 76.9
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.0e-52 210.7 134 73.9
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 6.1e-50 201.4 123 76.4
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 1.4e-49 200.3 123 74.8
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 2.3e-49 199.5 191 51.8
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.8e-46 189.9 114 79.8
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.3e-44 183.7 114 76.3
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.1e-42 176.4 112 72.3
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 5.2e-41 171.8 93 86.0
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.5e-40 170.2 122 66.4
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.5e-40 170.2 175 51.4
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.2e-39 166.4 99 77.8
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 4.3e-35 152.1 92 79.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 7.3e-35 151.4 186 41.9
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 2.2e-31 139.8 76 84.2
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 88 76.1
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 6.4e-31 138.3 88 76.1
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 8.3e-31 137.9 73 86.3
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.2e-30 136.0 71 85.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 7.1e-30 134.8 73 83.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 7.1e-30 134.8 73 83.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 7.1e-30 134.8 73 83.6
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 9.5e-27 124.4 64 87.5
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.0e-20 104.4 74 70.3
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.6e-18 97.1 59 79.7
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-14 83.2 56 75.0
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.0e-13 78.6 90 48.9
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.3e-12 76.6 83 50.6
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.3e-12 76.6 83 50.6
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 8.7e-12 74.7 40 85.0
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 7.3e-11 71.6 93 45.2
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 4.8e-10 68.9 56 60.7


User provided reference genes

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