Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1602.8 815 100.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1426.4 813 88.7
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1417.5 815 88.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1403.7 818 87.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1394.8 818 86.7
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1390.2 818 86.6
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1214.9 809 76.1
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1208.0 810 74.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1204.9 809 75.8
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1193.7 811 74.8
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1191.8 809 74.8
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1176.8 809 73.4
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1173.7 811 73.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1168.7 808 73.3
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1161.0 809 72.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1159.1 814 71.3
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1154.8 831 70.9
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1154.4 812 72.9
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1153.3 812 72.4
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1150.2 811 72.4
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1148.3 818 70.8
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1147.9 808 71.2
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1146.3 811 72.1
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1129.8 811 71.6
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1127.1 807 71.9
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 0.0e+00 1095.1 810 68.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1092.0 817 68.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1086.6 811 67.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 0.0e+00 1076.2 816 68.5
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 5.6e-312 1074.3 816 66.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.7e-311 1072.4 811 69.7
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 9.4e-310 1066.6 810 66.4
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.6e-309 1065.8 794 68.8
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 3.6e-309 1064.7 812 66.4
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 2.3e-308 1062.0 820 66.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 8.8e-308 1060.1 811 66.5
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 3.3e-307 1058.1 872 64.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 4.4e-307 1057.7 826 66.1
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 4.4e-307 1057.7 796 66.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.3e-306 1056.2 824 65.3
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.7e-306 1055.8 817 67.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 6.3e-306 1053.9 815 66.1
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.4e-305 1052.7 826 64.6
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 3.1e-305 1051.6 784 66.6
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 4.1e-305 1051.2 819 65.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.6e-304 1049.3 785 67.6
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.3e-303 1046.2 730 72.2
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 8.5e-303 1043.5 818 65.5
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.9e-302 1042.3 813 66.9
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 2.5e-302 1042.0 813 65.4
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 2.5e-302 1042.0 840 64.9
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 4.2e-302 1041.2 813 65.7
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.0e-300 1036.6 814 65.4
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 5.2e-300 1034.2 812 64.5
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 7.5e-299 1030.4 813 64.3
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 9.7e-299 1030.0 791 67.1
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 1.3e-298 1029.6 812 64.3
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 6.3e-298 1027.3 835 63.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.4e-297 1026.2 809 65.0
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.8e-297 1025.8 813 64.0
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 9.1e-297 1023.5 808 64.9
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.6e-296 1022.7 815 64.5
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.7e-295 1019.2 813 64.7
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.9e-294 1015.8 815 64.0
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.9e-294 1015.8 813 63.0
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 4.2e-294 1014.6 790 64.9
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 5.5e-294 1014.2 827 62.8
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 9.4e-294 1013.4 841 62.7
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 793 65.8
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 2.7e-293 1011.9 796 64.4
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 8.0e-293 1010.4 814 63.1
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 8.0e-293 1010.4 821 63.3
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.0e-292 1010.0 819 64.1
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 5.7e-291 1004.2 815 63.8
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.3e-290 1003.0 782 64.5
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 785 66.5
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.0e-289 997.3 799 65.7
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.7e-287 992.6 819 62.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 5.4e-281 971.1 823 60.6
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 4.5e-280 968.0 820 63.2
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 3.8e-279 964.9 812 61.7
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.6e-277 959.5 811 61.0
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.3e-262 908.7 858 58.4
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.8e-261 905.6 819 59.2
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.7e-261 904.8 733 62.5
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-260 903.3 621 75.2
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-260 903.3 621 75.2
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.4e-260 903.3 877 55.2
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.2e-259 900.2 612 74.2
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 1.4e-252 876.7 764 60.5
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.9e-252 874.0 621 73.3
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 7.8e-240 834.3 592 71.5
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 3.2e-233 812.4 624 66.7
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.2e-232 810.4 619 67.5
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 3.3e-214 749.2 716 53.9
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 7.2e-201 704.9 801 49.9
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 9.7e-198 694.5 806 46.5
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 4.5e-195 685.6 769 47.6
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 5.7e-190 668.7 547 64.5
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.9e-186 656.4 720 48.2
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 7.2e-169 598.6 403 74.4
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 3.5e-163 579.7 472 60.8
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.0e-160 568.5 482 62.4
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.6e-152 544.3 550 52.4
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.0e-150 537.3 395 70.9
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 2.8e-144 516.9 332 74.4
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.4e-134 483.4 343 69.1
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.8e-133 479.9 340 67.9
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 2.1e-131 474.2 782 37.1
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.1e-128 462.2 394 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.7e-117 427.9 794 36.3
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.9e-113 414.5 780 35.0
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 1.8e-103 381.3 480 49.0
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.6e-99 366.7 457 44.2
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 8.7e-98 362.5 279 67.7
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 9.7e-89 332.4 244 66.0
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.6e-86 324.3 295 59.0
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.0e-79 299.7 379 47.5
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.9e-77 294.3 859 28.9
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.1e-75 288.1 183 73.2
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.0e-70 271.6 323 46.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.5e-65 255.4 305 45.9
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.7e-65 253.4 190 65.3
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.5e-62 243.8 230 50.9
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.0e-58 232.6 144 75.0
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-55 222.2 176 65.9
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.6e-54 218.8 233 58.8
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 7.5e-49 199.9 158 62.0
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.5e-44 184.9 168 59.5
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.0e-42 177.6 168 57.1
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 8.9e-42 176.4 214 44.4
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-39 169.1 150 58.7
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 6.6e-37 160.2 211 44.1
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-26 125.9 153 48.4
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-23 115.9 107 53.3
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.0e-21 109.8 812 22.0
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.1e-12 79.7 92 45.7
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.4e-10 72.8 406 22.2
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 5.3e-10 70.9 72 48.6
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.4e-07 62.0 43 65.1


User provided reference genes

Program Settings