Gene: Solyc11g008120.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g008120.3
- Transcript Identifier Solyc11g008120.3.1
- Gene Type Coding gene
- Location SL4.0ch11 : 2361584-2364783 : positive
Gene Family Information
- ID HOM05D005539
- #Genes/#Species 139/94
- Phylogenetic origin
- ID ORTHO05D006644
- #Genes/#Species 140/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc11g008120.3.1
- uniprot A0A3Q7IQ28
- gene_id Solyc11g008120
Descriptions
- Description Nuclear pore complex protein NUP88 (AHRD V3.3 *** A0A2G2YE72_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000056 | IBA IEA | GOA Database | ribosomal small subunit export from nucleus | |
| GO:0000056 | IEA | InterPro | ribosomal small subunit export from nucleus | |
| GO:0006611 | ISO | PLAZA Integrative Orthology | protein export from nucleus | AT5G05680 |
| GO:0045087 | ISO | PLAZA Integrative Orthology | innate immune response | AT5G05680 |
| GO:0009627 | ISO | PLAZA Integrative Orthology | systemic acquired resistance | AT5G05680 |
| GO:0000055 | IBA IEA | GOA Database | ribosomal large subunit export from nucleus | |
| GO:0000055 | IEA | InterPro | ribosomal large subunit export from nucleus | |
| GO:0006606 | IBA | GOA Database | protein import into nucleus | |
| GO:0006406 | IBA | GOA Database | mRNA export from nucleus | |
| GO:0006913 | IEA | GOA Database | nucleocytoplasmic transport | |
| GO:0006913 | IEA | InterPro | nucleocytoplasmic transport | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0051028 | IEA | GOA Database | mRNA transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G05680 |
| GO:0017056 | IEA | GOA Database | structural constituent of nuclear pore | |
| GO:0017056 | IEA | InterPro | structural constituent of nuclear pore |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005635 | ISO | PLAZA Integrative Orthology | nuclear envelope | AT5G05680 |
| GO:0005643 | IBA IEA | GOA Database | nuclear pore | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 23.5.1.1.3.2 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP88) |