Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 9.8e-206 719.9 371 100.0
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.1e-140 503.8 326 78.2
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.9e-138 495.4 326 75.8
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 5.1e-138 495.0 327 75.5
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.7e-138 494.6 327 75.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 8.8e-138 494.2 350 73.7
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 4.8e-120 435.3 327 68.5
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.1e-119 434.1 327 68.2
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.0e-113 413.3 327 63.9
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.8e-112 409.5 329 64.1
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.7e-112 409.1 329 64.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 4.1e-111 405.6 324 63.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.2e-110 404.1 329 62.3
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 5.9e-110 401.7 327 60.9
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.7e-107 392.9 327 65.1
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 4.7e-107 392.1 331 62.8
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 4.0e-106 389.0 328 60.1
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 3.4e-105 386.0 328 61.0
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 9.8e-105 384.4 325 60.6
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 9.8e-105 384.4 329 59.9
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.8e-104 382.9 330 59.7
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 8.3e-104 381.3 328 59.1
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-103 380.9 326 61.0
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.1e-103 380.9 328 58.5
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.8e-103 380.2 329 60.2
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 9.2e-103 377.9 324 59.6
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.0e-102 376.7 327 58.7
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 4.5e-102 375.6 327 58.7
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 5.9e-102 375.2 331 60.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 7.7e-102 374.8 330 59.4
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 7.7e-102 374.8 330 59.4
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 2.9e-101 372.9 327 58.7
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.9e-101 372.9 328 55.8
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.6e-101 371.7 325 60.6
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 8.6e-101 371.3 321 60.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 8.6e-101 371.3 356 56.7
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 8.6e-101 371.3 328 57.6
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 8.6e-101 371.3 327 59.3
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.1e-100 370.9 330 58.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.5e-100 369.8 384 53.1
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 9.5e-100 367.9 319 59.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.1e-99 366.7 327 58.1
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 3.6e-99 365.9 273 65.6
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.7e-99 365.5 383 51.2
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 8.0e-99 364.8 260 66.5
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.0e-98 364.4 323 60.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.4e-98 364.0 329 59.0
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.4e-98 364.0 329 59.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 6.8e-98 361.7 298 60.1
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 8.9e-98 361.3 330 57.9
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.2e-97 360.9 330 58.2
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.2e-97 360.9 317 60.3
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 4.4e-97 359.0 330 57.9
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 5.7e-97 358.6 326 57.7
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 7.5e-97 358.2 330 57.6
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 9.8e-97 357.8 326 58.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.3e-96 357.5 273 63.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.2e-96 356.7 337 56.1
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.2e-96 356.7 327 57.5
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 3.7e-96 355.9 330 57.6
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 3.7e-96 355.9 248 68.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 6.4e-96 355.1 327 55.7
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 8.3e-96 354.8 260 66.5
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.1e-95 354.4 240 68.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.2e-94 350.9 329 55.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.2e-94 350.9 330 55.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.0e-94 350.1 327 59.3
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.0e-94 350.1 325 57.5
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.7e-94 349.7 323 55.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 4.6e-94 349.0 327 57.5
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 4.6e-94 349.0 327 55.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 7.8e-94 348.2 272 61.8
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.3e-93 346.7 321 57.0
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 3.9e-93 345.9 325 57.2
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 3.9e-93 345.9 365 51.8
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 8.6e-93 344.7 352 52.6
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.1e-92 344.4 327 59.0
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.9e-92 343.6 330 55.2
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.5e-92 343.2 350 52.0
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.3e-92 342.8 328 56.4
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 5.6e-92 342.0 323 53.6
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 7.3e-92 341.7 344 53.2
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.8e-91 339.7 354 50.8
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.7e-91 339.0 350 52.0
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.7e-91 339.0 350 52.0
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 8.0e-91 338.2 320 54.4
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.4e-90 337.4 272 57.7
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 8.9e-90 334.7 325 54.8
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.0e-89 333.6 211 73.5
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 5.8e-89 332.0 372 50.3
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 5.8e-89 332.0 271 60.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 7.5e-89 331.6 299 52.8
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.3e-88 330.9 352 49.7
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 3.2e-87 326.2 341 51.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 5.4e-87 325.5 320 54.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.0e-86 323.6 304 54.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 3.5e-86 322.8 262 61.5
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.7e-85 320.5 236 63.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 5.0e-85 318.9 357 49.3
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.7e-83 312.4 293 57.3
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 6.2e-83 312.0 359 47.6
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.8e-82 310.5 366 51.6
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 4.0e-82 309.3 214 66.8
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 5.2e-82 308.9 312 49.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 5.2e-82 308.9 323 48.6
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 7.1e-79 298.5 334 50.0
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.0e-78 295.4 211 68.2
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.6e-75 287.3 318 49.7
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.9e-69 266.2 324 48.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 9.3e-63 245.0 219 52.5
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 3.5e-62 243.0 235 55.7
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 5.1e-61 239.2 223 57.0
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 5.1e-61 239.2 223 57.0
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.6e-60 235.7 240 54.2
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.6e-59 234.2 268 47.8
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 4.8e-59 232.6 352 39.2
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.4e-57 226.5 242 53.3
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 2.1e-54 217.2 343 37.9
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.1e-52 211.5 236 45.8
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 4.0e-50 203.0 207 53.1
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 2.5e-44 183.7 200 56.5
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 7.4e-44 182.2 326 35.9
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-43 181.4 390 33.3
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.6e-41 173.7 225 46.2
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 4.5e-41 172.9 212 39.6
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 2.5e-39 167.2 166 55.4
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.2e-39 166.8 205 43.4
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.1e-38 164.1 264 41.7
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 3.5e-38 163.3 224 43.8
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.0e-37 161.8 171 54.4
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.8e-34 151.0 205 41.5
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 4.1e-34 149.8 101 66.3
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.0e-32 145.2 111 64.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.9e-28 131.0 190 40.5
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.2e-24 117.5 270 30.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.7e-19 101.3 195 31.3
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.2e-15 86.7 118 49.2
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.4e-13 81.6 192 28.6
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 4.5e-09 66.6 45 62.2
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 4.7e-06 56.6 154 22.7


User provided reference genes

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