Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G113600 Theobroma cacao HOM05D003101 ORTHO05D026231 0.0e+00 1085.1 557 100.0
Duzib187G0750 Durio zibethinus HOM05D003101 ORTHO05D026231 5.5e-176 621.7 535 66.5
COL.COLO4_34886 Corchorus olitorius HOM05D003101 ORTHO05D026231 1.1e-102 378.3 399 58.4
TAR383G0973 Trochodendron aralioides HOM05D003101 ORTHO05D003550 5.9e-37 159.8 565 30.6
Nn8g39252 Nelumbo nucifera HOM05D003101 ORTHO05D003550 2.9e-36 157.5 392 34.2
Atru.chr7.1311 Acer truncatum HOM05D003101 ORTHO05D026231 1.4e-35 155.2 487 33.3
Nn2g11806 Nelumbo nucifera HOM05D003101 ORTHO05D003550 7.2e-35 152.9 556 29.0
GSVIVG01017130001 Vitis vinifera HOM05D003101 ORTHO05D003550 9.4e-35 152.5 431 33.4
MBI01_g16637_MAGBIO Magnolia biondii HOM05D003101 ORTHO05D003550 3.6e-34 150.6 550 28.9
Dinv30524 Davidia involucrata HOM05D003101 ORTHO05D003550 1.3e-31 142.1 470 30.9
Dinv38057 Davidia involucrata HOM05D003101 ORTHO05D003550 1.3e-31 142.1 560 29.1
Manes.04G121800 Manihot esculenta HOM05D003101 ORTHO05D003550 2.2e-31 141.4 559 29.0
TAR624G0149 Trochodendron aralioides HOM05D003101 ORTHO05D003550 1.1e-30 139.0 555 28.3
QL02p085909 Quercus lobata HOM05D003101 ORTHO05D003550 1.8e-30 138.3 463 29.2
Gorai.009G132700 Gossypium raimondii HOM05D003101 ORTHO05D003550 2.0e-29 134.8 560 28.6
Gohir.D05G128500 Gossypium hirsutum HOM05D003101 ORTHO05D003550 4.5e-29 133.7 560 28.6
Manes.11G048500 Manihot esculenta HOM05D003101 ORTHO05D003550 5.9e-29 133.3 561 28.3
COL.COLO4_30344 Corchorus olitorius HOM05D003101 ORTHO05D003550 2.2e-28 131.3 567 27.7
Cfa002053 Carpinus fangiana HOM05D003101 ORTHO05D003550 3.2e-27 127.5 490 28.4
Gohir.A05G127600 Gossypium hirsutum HOM05D003101 ORTHO05D003550 3.2e-27 127.5 568 28.2
TAR626G0726 Trochodendron aralioides HOM05D003101 ORTHO05D003550 5.5e-27 126.7 564 27.7
Prupe.3G073300 Prunus persica HOM05D003101 ORTHO05D003550 9.4e-27 125.9 551 28.1
PGR102G1309 Punica granatum HOM05D003101 ORTHO05D003550 3.6e-26 124.0 471 28.5
ATR0037G010 Amborella trichopoda HOM05D003101 ORTHO05D003550 8.0e-26 122.9 334 31.7
Gorai.011G077400 Gossypium raimondii HOM05D003101 ORTHO05D003550 8.0e-26 122.9 566 27.6
Thecc.06G084100 Theobroma cacao HOM05D003101 ORTHO05D003550 1.4e-25 122.1 559 28.8
Gohir.D10G072000 Gossypium hirsutum HOM05D003101 ORTHO05D003550 3.0e-25 120.9 566 27.4
CAN.G438.56 Capsicum annuum HOM05D003101 ORTHO05D003550 4.0e-25 120.6 423 29.8
Gohir.A09G084000 Gossypium hirsutum HOM05D003101 ORTHO05D003550 4.0e-25 120.6 431 30.4
Potri.003G056500 Populus trichocarpa HOM05D003101 ORTHO05D003550 8.8e-25 119.4 560 25.9
Sed0012835 Sechium edule HOM05D003101 ORTHO05D003550 8.8e-25 119.4 563 27.4
Gohir.D09G083800 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.2e-24 119.0 422 30.8
Gohir.A10G079500 Gossypium hirsutum HOM05D003101 ORTHO05D003550 2.6e-24 117.9 571 26.6
CSS0010012 Camellia sinensis var. sinensis HOM05D003101 ORTHO05D003550 3.3e-24 117.5 369 28.7
TWI12G0521 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 2.2e-23 114.8 418 28.9
Duzib160G0782 Durio zibethinus HOM05D003101 ORTHO05D003550 4.8e-23 113.6 562 29.2
Rhsim08G0219800 Rhododendron simsii HOM05D003101 ORTHO05D003550 4.8e-23 113.6 318 30.2
Ciclev10010311m.g Citrus clementina HOM05D003101 ORTHO05D003550 6.3e-23 113.2 463 27.2
PGSC0003DMG402002640 Solanum tuberosum HOM05D003101 ORTHO05D003550 6.3e-23 113.2 423 29.1
HPP92_009103 Vanilla planifolia HOM05D003101 ORTHO05D003550 6.3e-23 113.2 383 30.3
ClCG09G002280 Citrullus lanatus HOM05D003101 ORTHO05D003550 1.1e-22 112.5 559 25.8
Duzib235G1478 Durio zibethinus HOM05D003101 ORTHO05D003550 1.4e-22 112.1 480 26.9
Solyc03g120300.3 Solanum lycopersicum HOM05D003101 ORTHO05D003550 1.8e-22 111.7 422 27.7
TWI18G0488 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 1.8e-22 111.7 431 30.2
Gorai.006G099800 Gossypium raimondii HOM05D003101 ORTHO05D003550 2.4e-22 111.3 422 29.6
Haze_25690 Corylus avellana HOM05D003101 ORTHO05D003550 4.1e-22 110.5 465 28.6
Sabra03G0031900 Salix brachista HOM05D003101 ORTHO05D003550 7.0e-22 109.8 512 25.8
Actinidia01797 Actinidia chinensis HOM05D003101 ORTHO05D003550 9.1e-22 109.4 564 26.1
EL10Ac9g21983 Beta vulgaris HOM05D003101 ORTHO05D003550 9.1e-22 109.4 571 27.1
Sopen03g039190 Solanum pennellii HOM05D003101 ORTHO05D003550 1.6e-21 108.6 422 27.5
Lj9A506T42 Lonicera japonica HOM05D003101 ORTHO05D003550 2.0e-21 108.2 473 29.2
MSTRG.4727 Avicennia marina HOM05D003101 ORTHO05D003550 2.7e-21 107.8 432 28.5
QL05p025236 Quercus lobata HOM05D003101 ORTHO05D003550 2.7e-21 107.8 558 25.3
Gohir.D03G074200 Gossypium hirsutum HOM05D003101 ORTHO05D003550 3.5e-21 107.5 569 26.4
Haze_16450 Corylus avellana HOM05D003101 ORTHO05D003550 7.7e-21 106.3 566 26.7
MELO3C023364.2 Cucumis melo HOM05D000041 ORTHO05D000061 7.7e-21 106.3 483 24.8
Lj3g0021137 Lotus japonicus HOM05D003101 ORTHO05D003550 7.7e-21 106.3 567 25.0
CsaV3_7G033030 Cucumis sativus L. HOM05D003101 ORTHO05D003550 1.0e-20 105.9 557 25.0
Hma1.2p1_0682F.1_g202700 Hydrangea macrophylla HOM05D003101 ORTHO05D003550 5.0e-20 103.6 518 25.9
PSO063G5160 Papaver somniferum HOM05D003101 ORTHO05D003550 6.5e-20 103.2 397 29.0
CANSAT56G0412 Cannabis sativa HOM05D003101 ORTHO05D003550 8.5e-20 102.8 565 26.5
CDE04G0005 Ceratophyllum demersum HOM05D003101 ORTHO05D003550 8.5e-20 102.8 561 25.7
Cfa003282 Carpinus fangiana HOM05D003101 ORTHO05D003550 1.1e-19 102.4 538 26.6
Gorai.002G058500 Gossypium raimondii HOM05D003101 ORTHO05D003550 1.1e-19 102.4 567 25.9
Gohir.A02G122300 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.5e-19 102.1 565 26.0
Actinidia14364 Actinidia chinensis HOM05D003101 ORTHO05D003550 4.2e-19 100.5 459 27.2
Rhsim12G0197000 Rhododendron simsii HOM05D003101 ORTHO05D003550 4.2e-19 100.5 386 28.8
Oeu063973.3 Olea europaea HOM05D003101 ORTHO05D003550 5.5e-19 100.1 561 27.1
Sed0009602 Sechium edule HOM05D003101 ORTHO05D003550 5.5e-19 100.1 557 25.5
Glyma.07G034600 Glycine max HOM05D003101 ORTHO05D003550 9.4e-19 99.4 355 29.0
Glyma.08G207400 Glycine max HOM05D003101 ORTHO05D003550 9.4e-19 99.4 405 27.9
CDE02G4492 Ceratophyllum demersum HOM05D003101 ORTHO05D003550 1.6e-18 98.6 218 34.4
Nitab4.5_0003885g0080 Nicotiana tabacum HOM05D003101 ORTHO05D003550 1.6e-18 98.6 345 29.6
PSO782G5747 Papaver somniferum HOM05D003101 ORTHO05D003550 1.6e-18 98.6 385 27.5
Ciclev10024985m.g Citrus clementina HOM05D003101 ORTHO05D003550 2.1e-18 98.2 550 25.8
Glyma.15G013500 Glycine max HOM05D003101 ORTHO05D003550 2.1e-18 98.2 574 25.3
Hund06603 Selenicereus undatus HOM05D003101 ORTHO05D003550 2.1e-18 98.2 512 27.7
MSTRG.11085 Avicennia marina HOM05D003101 ORTHO05D003550 2.7e-18 97.8 413 27.1
Solyc12g042990.3 Solanum lycopersicum HOM05D003101 ORTHO05D003550 2.7e-18 97.8 376 28.5
TPR.G24188 Trifolium pratense HOM05D003101 ORTHO05D003550 3.6e-18 97.4 438 27.4
Cc04_g03550 Coffea canephora HOM05D003101 ORTHO05D003550 4.7e-18 97.1 415 30.1
Glyma.13G360400 Glycine max HOM05D003101 ORTHO05D003550 4.7e-18 97.1 412 27.9
FAN02G4233 Fragaria x ananassa HOM05D003101 ORTHO05D003550 8.0e-18 96.3 330 28.8
Hund00605 Selenicereus undatus HOM05D003101 ORTHO05D003550 1.0e-17 95.9 470 27.9
arahy.Tifrunner.gnm1.ann1.QF777V Arachis hypogaea HOM05D003101 ORTHO05D003550 1.4e-17 95.5 530 24.0
arahy.Tifrunner.gnm1.ann1.V93J5T Arachis hypogaea HOM05D003101 ORTHO05D003550 1.4e-17 95.5 530 24.0
Psat7g253080 Pisum sativum HOM05D003101 ORTHO05D003550 1.4e-17 95.5 437 27.7
SEGI_16629 Sequoiadendron giganteum HOM05D003101 ORTHO05D003550 1.4e-17 95.5 264 31.4
vmacro18925 Vaccinium macrocarpon HOM05D003101 ORTHO05D003550 1.8e-17 95.1 319 28.8
Phvul.005G172200 Phaseolus vulgaris HOM05D003101 ORTHO05D003550 2.3e-17 94.7 580 25.2
Zm00001eb161170 Zea mays HOM05D003101 ORTHO05D003550 2.3e-17 94.7 405 27.4
Sopen12g022220 Solanum pennellii HOM05D003101 ORTHO05D003550 3.0e-17 94.4 438 26.9
Os01g0595100 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 4.0e-17 94.0 394 26.1
Atru.chr1.3230 Acer truncatum HOM05D003101 ORTHO05D003550 6.8e-17 93.2 507 26.0
VMungo1080G1584 Vigna mungo HOM05D003101 ORTHO05D003550 6.8e-17 93.2 584 25.3
Medtr4g011920 Medicago truncatula HOM05D003101 ORTHO05D003550 8.8e-17 92.8 405 28.1
TWI75G0984 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 8.8e-17 92.8 398 29.6
unitig_8.g3892 Utricularia gibba HOM05D003101 ORTHO05D003550 1.2e-16 92.4 489 25.8
AUR62011620 Chenopodium quinoa HOM05D003101 ORTHO05D003550 1.5e-16 92.0 411 30.4
Migut.I00851 Erythranthe guttata HOM05D003101 ORTHO05D003550 1.5e-16 92.0 381 26.5
FAN05G5709 Fragaria x ananassa HOM05D003101 ORTHO05D003550 1.5e-16 92.0 327 28.7
Lalb_Chr24g0395781 Lupinus albus HOM05D003101 ORTHO05D003550 1.5e-16 92.0 411 27.3
Oeu033489.1 Olea europaea HOM05D003101 ORTHO05D003550 1.5e-16 92.0 386 28.2
RcHm_v2.0_Chr2g0137581 Rosa chinensis HOM05D003101 ORTHO05D003550 1.5e-16 92.0 551 24.7
PGSC0003DMG401028616 Solanum tuberosum HOM05D003101 ORTHO05D003550 1.5e-16 92.0 426 27.2
FvH4_6g30960 Fragaria vesca HOM05D003101 ORTHO05D003550 2.0e-16 91.7 399 27.1
Os05g0534600 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 2.0e-16 91.7 525 23.0
Potri.001G178900 Populus trichocarpa HOM05D003101 ORTHO05D003550 3.4e-16 90.9 500 27.0
FAN09G0931 Fragaria x ananassa HOM05D003101 ORTHO05D003550 5.7e-16 90.1 327 28.7
Ah.01g006020 Amaranthus hybridus HOM05D003101 ORTHO05D003550 7.5e-16 89.7 370 28.4
Sc12g0009260 Simmondsia chinensis HOM05D003101 ORTHO05D003550 7.5e-16 89.7 555 25.0
vmacro16945 Vaccinium macrocarpon HOM05D003101 ORTHO05D003550 7.5e-16 89.7 512 25.8
CiPaw.01G240300 Carya illinoinensis HOM05D003101 ORTHO05D003550 1.3e-15 89.0 535 25.4
Peaxi162Scf00207g00946 Petunia axillaris HOM05D003101 ORTHO05D003550 1.7e-15 88.6 382 26.4
Eucgr.F03010 Eucalyptus grandis HOM05D003101 ORTHO05D003550 2.2e-15 88.2 482 25.7
Zm00001eb357620 Zea mays HOM05D003101 ORTHO05D003550 2.2e-15 88.2 405 27.4
FAN14G4821 Fragaria x ananassa HOM05D003101 ORTHO05D003550 6.3e-15 86.7 329 29.5
MD09G1214900 Malus domestica HOM05D003101 ORTHO05D003550 6.3e-15 86.7 559 25.8
MD00G1201000 Malus domestica HOM05D003101 ORTHO05D003550 3.1e-14 84.3 492 26.2
AUR62016435 Chenopodium quinoa HOM05D003101 ORTHO05D003550 7.0e-14 83.2 411 29.2
Ca_20400_v3 Cicer arietinum L. HOM05D003101 ORTHO05D003550 7.0e-14 83.2 559 24.3
Phvul.010G151300 Phaseolus vulgaris HOM05D003101 ORTHO05D003550 2.7e-13 81.3 570 26.1
Lalb_Chr14g0373491 Lupinus albus HOM05D003101 ORTHO05D003550 3.5e-13 80.9 550 25.5
ECA234G1424 Erigeron canadensis HOM05D003101 ORTHO05D003550 5.9e-13 80.1 462 24.5
Lalb_Chr22g0351191 Lupinus albus HOM05D003101 ORTHO05D003550 7.7e-13 79.7 555 26.1
MD17G1197400 Malus domestica HOM05D003101 ORTHO05D003550 2.3e-12 78.2 212 34.0
unitig_22.g5467 Utricularia gibba HOM05D003101 ORTHO05D003550 2.3e-12 78.2 407 26.5
DCAR_021316 Daucus carota HOM05D003101 ORTHO05D003550 3.8e-12 77.4 336 26.2
Zm00001eb293900 Zea mays HOM05D003101 ORTHO05D003550 3.8e-12 77.4 261 28.4
Aqoxy7G01818 Aquilegia oxysepala HOM05D003101 ORTHO05D003550 6.5e-12 76.6 556 23.7
Nitab4.5_0002327g0040 Nicotiana tabacum HOM05D003101 ORTHO05D003550 6.5e-12 76.6 219 33.8
VMungo0331G1559 Vigna mungo HOM05D003101 ORTHO05D003550 1.5e-11 75.5 569 23.9
Nitab4.5_0000351g0170 Nicotiana tabacum HOM05D003101 ORTHO05D003550 2.5e-11 74.7 293 29.7
Lj3g0018219 Lotus japonicus HOM05D003101 ORTHO05D003550 7.2e-11 73.2 276 31.2
Ah.01g021210 Amaranthus hybridus HOM05D003101 ORTHO05D003550 1.2e-10 72.4 497 25.6
DCAR_016225 Daucus carota HOM05D003101 ORTHO05D003550 6.1e-10 70.1 385 27.5
CSS0018769 Camellia sinensis var. sinensis HOM05D003101 ORTHO05D003550 8.0e-10 69.7 117 35.9
SGA_v2.0_scaffold117G32385 Striga asiatica HOM05D003101 ORTHO05D003550 4.0e-09 67.4 171 31.0
Oeu024064.1 Olea europaea HOM05D003101 ORTHO05D003550 6.8e-09 66.6 410 25.9
Nitab4.5_0006801g0040 Nicotiana tabacum HOM05D003101 ORTHO05D003550 1.2e-08 65.9 352 27.3
HanXRQChr10g0314941 Helianthus annuus HOM05D003101 ORTHO05D003550 2.0e-08 65.1 232 28.9
SHI24317 Sapria himalayana HOM05D003101 ORTHO05D003550 3.4e-08 64.3 183 30.6
Lsat_1_v5_gn_5_129921 Lactuca sativa HOM05D003101 ORTHO05D003550 5.7e-08 63.5 374 26.2
Cpa.g.sc67.14 Carica papaya HOM05D003101 ORTHO05D003550 7.5e-08 63.2 130 33.8
HanXRQChr14g0455931 Helianthus annuus HOM05D003101 ORTHO05D003550 9.8e-08 62.8 188 32.4
SGA_v2.0_scaffold279G46820 Striga asiatica HOM05D003101 ORTHO05D003550 2.8e-07 61.2 70 44.3
CARHR074480 Cardamine hirsuta HOM05D003101 ORTHO05D003550 3.7e-07 60.8 182 34.6
Oeu000441.3 Olea europaea HOM05D003101 ORTHO05D003550 4.9e-07 60.5 549 21.9
Carub.0002s2751 Capsella rubella HOM05D003101 ORTHO05D003550 1.4e-06 58.9 227 31.7
Lsat_1_v5_gn_3_22201 Lactuca sativa HOM05D003101 ORTHO05D003550 2.4e-06 58.2 97 39.2
Lsat_1_v5_gn_6_22701 Lactuca sativa HOM05D003101 ORTHO05D003550 2.4e-06 58.2 97 39.2
THA.LOC104813563 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 5.4e-06 57.0 293 28.0
BcaC07g38777 Brassica carinata HOM05D003101 ORTHO05D003550 9.2e-06 56.2 69 44.9
A06p11280 Brassica napus HOM05D003101 ORTHO05D003550 9.2e-06 56.2 172 32.0
C08p17080 Brassica napus HOM05D003101 ORTHO05D003550 9.2e-06 56.2 69 44.9
BolC8t49334H Brassica oleracea HOM05D003101 ORTHO05D003550 9.2e-06 56.2 69 44.9


User provided reference genes

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