Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 6.2e-233 810.4 414 100.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.4e-223 778.1 409 96.8
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 5.8e-223 777.3 414 95.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 6.2e-217 757.3 414 93.5
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 9.6e-210 733.4 414 89.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.8e-208 729.2 414 89.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 9.0e-208 726.9 414 89.1
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.6e-207 725.3 414 88.6
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.3e-206 723.0 414 88.9
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.4e-205 719.5 414 88.4
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.2e-205 718.0 414 88.4
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.1e-204 715.7 416 88.5
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.5e-204 714.9 414 87.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.6e-204 714.5 414 87.9
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.6e-204 714.5 414 87.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.0e-204 714.1 414 89.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.3e-203 713.0 414 87.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-202 709.1 414 86.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.5e-202 708.8 414 85.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.6e-202 707.6 414 86.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.6e-202 707.6 414 86.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.1e-201 703.7 414 85.3
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-200 702.6 414 85.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.4e-200 702.2 413 86.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.0e-200 701.4 411 86.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 5.3e-200 701.0 413 85.0
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 5.3e-200 701.0 412 86.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.0e-200 700.3 414 85.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-199 699.9 414 86.0
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.5e-199 699.5 414 86.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-199 698.7 414 85.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.6e-199 698.7 414 85.5
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.6e-199 698.7 412 85.2
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.4e-199 698.4 445 81.8
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.5e-199 698.0 413 86.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 9.9e-199 696.8 414 85.3
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-198 696.4 414 85.3
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.7e-198 696.0 414 84.8
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.8e-198 694.9 413 85.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 8.4e-198 693.7 414 85.3
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 8.4e-198 693.7 414 84.8
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.4e-197 693.0 414 84.8
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.9e-197 692.6 409 84.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.9e-197 692.6 371 95.4
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.4e-197 692.2 414 84.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 84.8
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 4.2e-197 691.4 414 84.5
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.2e-197 691.4 375 94.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 84.8
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 9.3e-197 690.3 413 85.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.2e-196 689.9 414 84.8
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-196 688.7 414 84.5
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.5e-196 688.3 414 84.1
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.3e-195 686.4 410 84.9
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.3e-195 686.4 409 86.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.0e-195 685.3 414 84.8
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.9e-195 684.9 426 83.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.9e-195 684.9 426 83.1
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 6.7e-195 684.1 426 82.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.1e-194 683.3 414 83.3
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.9e-194 682.6 410 84.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 83.1
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 9.6e-194 680.2 413 83.3
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.3e-193 679.9 413 84.3
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 82.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.1e-193 679.1 414 82.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.7e-193 678.3 416 83.9
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 6.2e-193 677.6 413 84.0
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 82.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.5e-191 672.9 413 81.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.4e-191 671.8 415 83.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.4e-191 671.8 413 82.1
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 5.8e-191 671.0 413 81.4
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 81.6
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 81.6
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.3e-190 669.8 411 81.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.9e-190 668.7 413 81.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.2e-188 663.3 420 80.7
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.6e-188 662.9 410 83.9
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.7e-187 657.5 414 81.4
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 8.7e-187 657.1 420 79.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 5.7e-186 654.4 415 81.2
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.4e-186 654.1 411 80.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.8e-183 644.4 429 77.9
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.3e-182 643.3 438 76.0
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 7.2e-181 637.5 416 79.1
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.0e-179 633.6 414 80.0
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 9.7e-178 627.1 415 76.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 3.7e-177 625.2 415 76.9
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.8e-177 624.8 413 73.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.3e-174 616.7 415 75.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.2e-173 611.7 406 78.6
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 8.8e-171 604.0 412 76.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.2e-169 599.4 414 74.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.7e-169 598.6 410 75.9
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.6e-164 582.0 410 71.2
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.6e-164 582.0 371 81.7
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-164 581.6 418 73.0
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 2.2e-161 572.8 410 69.0
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 2.8e-161 572.4 316 91.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 6.5e-158 561.2 485 65.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.7e-153 545.4 411 70.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.7e-150 536.6 398 66.8
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 9.8e-146 520.8 405 62.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.8e-144 516.5 412 63.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.8e-144 516.5 303 85.1
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-143 513.1 281 90.7
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-142 510.4 281 90.4
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.8e-139 500.0 296 84.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-128 464.2 257 91.4
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.7e-118 430.3 314 71.3
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 4.3e-117 425.6 313 71.2
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.1e-116 423.3 256 81.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.7e-113 412.5 285 73.3
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 8.1e-108 394.8 284 71.8
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 7.6e-106 388.3 292 72.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 3.6e-100 369.4 402 49.3
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.2e-89 333.6 191 89.0
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.1e-84 317.0 205 78.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.4e-82 309.7 238 67.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 8.1e-76 288.5 184 76.6
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.8e-73 279.6 199 71.9
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.2e-72 276.6 173 79.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-67 261.5 204 68.6
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 4.2e-64 249.6 398 38.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.9e-61 240.7 220 60.5
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.1e-59 233.4 131 88.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.4e-56 224.6 406 34.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.0e-54 218.4 321 36.1
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-52 211.1 199 62.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.9e-51 205.7 126 81.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 5.9e-50 202.6 121 79.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-47 193.7 161 66.5
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.9e-46 189.9 177 60.5
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-43 180.3 102 84.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.2e-39 168.3 414 32.6
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.8e-38 164.5 114 73.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 8.2e-36 155.6 83 88.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.7e-34 150.6 107 66.4
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.2e-32 143.7 80 85.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.8e-27 127.9 115 62.6
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.4e-19 100.9 99 58.6
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 9.2e-19 99.0 179 43.0
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 2.0e-18 97.8 127 54.3
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.7e-18 97.4 153 40.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.5e-18 97.1 51 90.2
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 3.3e-16 90.5 146 46.6
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.3e-14 84.3 59 83.1
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.6e-13 80.9 50 80.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.5e-13 79.3 71 63.4
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.7e-12 77.0 55 72.7
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 2.0e-10 71.2 81 50.6
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-08 65.5 40 80.0
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.1e-06 57.4 57 57.9


User provided reference genes

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