Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 0.0e+00 1109.0 570 100.0
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.9e-302 1040.8 571 92.6
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.6e-300 1034.2 570 93.0
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 4.7e-300 1033.9 571 92.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.1e-299 1032.7 570 93.7
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 4.0e-299 1030.8 571 92.3
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 9.5e-293 1009.6 591 89.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.0e-278 963.0 569 86.8
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 3.8e-273 944.5 573 83.8
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 4.9e-273 944.1 567 85.2
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.4e-272 941.8 570 84.7
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 9.3e-272 939.9 567 84.8
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 2.7e-271 938.3 568 83.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.4e-267 926.0 547 86.3
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 6.9e-267 923.7 567 82.7
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.6e-266 921.8 567 83.1
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 3.4e-266 921.4 568 83.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.9e-264 915.6 581 81.9
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 7.1e-264 913.7 569 84.0
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 9.3e-264 913.3 581 81.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.5e-263 911.4 572 83.0
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.0e-262 909.8 569 82.8
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 3.9e-262 907.9 573 81.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.1e-261 906.4 570 81.1
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.3e-261 904.4 566 82.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.3e-261 904.4 567 81.8
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.1e-260 902.1 569 81.2
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 8.1e-260 900.2 568 81.0
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.1e-259 899.8 572 80.9
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.1e-259 899.8 571 81.8
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.4e-259 898.7 570 80.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 5.3e-259 897.5 576 80.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 3.8e-257 891.3 569 78.7
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 8.4e-257 890.2 567 79.4
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 4.2e-256 887.9 570 79.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-255 885.6 574 79.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.1e-255 885.6 571 80.6
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 6.0e-255 884.0 567 79.9
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.1e-253 879.8 567 79.4
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.3e-253 878.2 568 79.0
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.3e-253 878.2 572 79.2
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 5.7e-253 877.5 574 80.0
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 8.2e-252 873.6 567 79.2
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.1e-251 873.2 569 77.3
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 5.3e-251 870.9 578 78.9
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.2e-250 869.8 588 77.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.6e-250 868.6 571 78.3
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.7e-249 865.9 572 79.0
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.0e-249 864.4 571 76.7
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.5e-249 864.0 571 76.7
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.9e-248 862.4 571 76.4
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.5e-248 862.1 567 78.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.2e-248 861.7 571 76.4
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.1e-245 853.2 566 76.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-244 849.4 598 73.2
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.6e-244 849.4 568 77.6
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.4e-243 845.5 570 78.2
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-242 842.8 568 76.9
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 7.7e-242 840.5 557 78.8
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.0e-241 840.1 572 76.6
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 2.5e-240 835.5 568 77.6
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 5.5e-240 834.3 568 76.4
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 5.5e-240 834.3 568 76.8
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.7e-239 832.0 569 76.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 6.1e-239 830.9 581 77.5
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 7.9e-239 830.5 528 81.1
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.5e-237 826.2 569 76.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 4.3e-237 824.7 569 76.3
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 5.7e-237 824.3 671 66.9
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 2.2e-236 822.4 517 82.6
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.4e-235 818.9 572 76.4
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 9.1e-235 817.0 569 74.0
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 4.7e-231 804.7 631 68.5
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.5e-229 799.7 578 73.9
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.1e-227 793.5 588 72.8
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 4.1e-227 791.6 567 72.1
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.0e-225 786.9 586 71.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 5.0e-225 784.6 567 73.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 8.5e-225 783.9 566 73.0
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.5e-225 783.9 561 74.2
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-224 783.1 567 75.0
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.6e-223 779.6 568 71.3
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 2.1e-223 779.2 552 73.7
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.3e-222 775.8 568 72.5
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.7e-222 774.2 599 67.1
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 8.8e-222 773.9 569 72.1
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.3e-220 770.0 568 72.5
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.7e-220 768.5 734 59.0
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 5.3e-219 764.6 566 72.4
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-218 763.5 571 71.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.2e-218 763.5 571 71.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.2e-218 763.5 571 71.3
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 3.5e-218 761.9 569 70.7
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 6.5e-217 757.7 571 70.6
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.9e-216 756.1 571 70.6
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 7.2e-216 754.2 498 76.9
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 4.7e-215 751.5 568 69.7
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 8.0e-215 750.7 564 69.1
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.2e-213 746.9 580 70.0
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.2e-210 736.9 558 70.8
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.2e-209 732.6 566 68.2
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.2e-208 728.4 572 72.0
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 6.1e-207 724.5 511 74.4
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.0e-201 707.2 573 68.6
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 5.0e-201 704.9 417 85.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.5e-200 702.6 569 67.5
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 8.3e-196 687.6 566 66.1
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 6.4e-188 661.4 488 70.9
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 2.7e-178 629.4 586 61.8
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 4.9e-164 582.0 382 79.6
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-140 504.6 512 55.7
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-140 504.6 512 55.7
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-140 504.6 512 55.7
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 8.4e-140 501.5 610 50.5
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.4e-134 483.4 603 50.4
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 5.7e-128 462.2 477 57.0
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 2.8e-127 459.9 261 84.3
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.4e-123 447.6 349 68.2
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 7.2e-91 339.0 254 70.5
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.0e-84 318.5 238 71.4
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 5.6e-83 312.8 163 95.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 4.7e-82 309.7 552 41.3
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 6.1e-82 309.3 199 79.4
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 4.0e-81 306.6 342 52.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 4.9e-79 299.7 164 91.5
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 2.3e-76 290.8 333 54.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.1e-73 280.4 165 84.8
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.9e-71 273.1 169 85.2
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 8.3e-71 272.3 194 73.7
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-68 263.8 283 52.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 6.2e-66 256.1 413 43.6
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.0e-56 224.6 437 35.9
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.1e-50 204.5 427 38.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 8.1e-50 202.6 139 72.7
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.9e-44 183.7 121 82.6
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-43 182.2 177 64.4
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 2.4e-41 174.5 595 31.1
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 3.1e-41 174.1 118 77.1
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-37 161.8 221 49.3
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 4.3e-35 153.7 158 60.1
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.3e-28 131.3 68 92.6
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 5.3e-25 120.2 113 57.5
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 2.6e-24 117.9 78 74.4
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 3.5e-21 107.5 58 89.7
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.7e-20 102.8 66 80.3
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.9e-19 101.7 182 37.9
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 9.7e-19 99.4 82 63.4
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.6e-18 98.6 67 79.1
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.8e-18 97.8 119 50.4
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.4e-17 95.5 84 66.7
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 9.0e-17 92.8 148 39.2
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 3.4e-16 90.9 92 52.2
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.0e-15 87.0 50 90.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 6.1e-13 80.1 87 46.0
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 5.7e-11 73.6 49 81.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.5e-08 65.5 64 60.9
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.0e-07 62.8 35 85.7
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.3e-07 62.4 61 52.5
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 5.0e-07 60.5 61 50.8


User provided reference genes

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