Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 6.6e-251 870.2 415 100.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 5.4e-221 770.8 416 87.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.4e-214 746.9 414 84.5
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.5e-207 726.1 416 83.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.8e-193 678.7 400 78.2
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.8e-190 668.3 416 76.4
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.1e-189 666.8 415 76.1
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 5.5e-189 664.5 414 75.6
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 3.5e-188 661.8 399 76.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 7.9e-188 660.6 395 78.0
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 5.7e-186 654.4 420 73.6
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 9.7e-186 653.7 405 74.1
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 4.8e-185 651.4 406 74.1
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 6.9e-184 647.5 405 74.1
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.2e-183 646.7 406 74.4
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 5.9e-183 644.4 418 74.6
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 5.9e-183 644.4 407 73.2
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 3.8e-182 641.7 406 73.6
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 6.5e-182 641.0 412 72.1
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.2e-181 638.6 420 72.4
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 5.5e-181 637.9 387 75.2
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 4.6e-180 634.8 416 72.8
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 7.9e-180 634.0 376 76.9
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 7.4e-178 627.5 418 71.1
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 1.3e-177 626.7 416 71.4
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 6.9e-176 620.9 415 70.6
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.2e-175 620.2 416 70.7
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.2e-175 620.2 411 70.8
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.5e-175 619.8 421 69.6
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 2.0e-175 619.4 419 69.9
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 6.5e-174 614.4 463 66.1
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 8.5e-174 614.0 414 69.1
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 3.2e-173 612.1 417 69.3
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 9.4e-173 610.5 410 71.0
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.6e-172 609.8 403 72.7
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.6e-172 608.6 463 63.7
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 4.7e-172 608.2 412 69.9
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.4e-171 606.7 362 75.1
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.4e-171 606.7 418 68.4
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 3.9e-171 605.1 412 68.7
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.9e-171 605.1 415 69.6
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.1e-170 603.6 408 69.1
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-170 603.2 411 68.1
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 2.6e-170 602.4 400 70.2
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 3.3e-170 602.1 414 70.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 5.7e-170 601.3 422 67.8
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 5.7e-170 601.3 411 68.1
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 9.7e-170 600.5 415 68.4
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.7e-169 599.7 419 70.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 2.8e-169 599.0 412 69.9
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 2.8e-169 599.0 402 69.7
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 3.7e-169 598.6 371 72.8
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 6.3e-169 597.8 405 70.4
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.1e-168 597.0 415 67.7
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.4e-168 596.7 421 68.9
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 4.1e-168 595.1 420 69.0
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.6e-167 593.2 423 67.8
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 3.5e-167 592.0 418 67.2
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 7.7e-167 590.9 419 68.0
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.7e-166 589.7 423 67.8
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-166 589.7 408 71.8
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.9e-166 589.0 413 67.3
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.9e-166 589.0 411 67.2
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 5.0e-166 588.2 420 67.9
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-165 586.6 424 67.9
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.9e-165 586.3 407 67.6
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 3.2e-165 585.5 440 65.5
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 3.2e-165 585.5 375 71.7
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 9.4e-165 583.9 403 69.7
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.2e-164 583.6 420 67.6
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 2.1e-164 582.8 417 68.1
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 4.7e-164 581.6 405 66.7
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.4e-163 580.1 400 69.5
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 4.0e-163 578.6 415 64.8
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.3e-161 573.5 410 65.1
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 2.8e-161 572.4 402 67.7
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 4.8e-161 571.6 425 66.4
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-161 571.6 406 69.7
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 8.2e-161 570.9 404 67.3
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.8e-160 569.7 418 66.3
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 5.3e-160 568.2 337 76.6
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 9.1e-160 567.4 410 66.6
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 8.5e-158 560.8 345 73.0
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 5.5e-157 558.1 363 69.7
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.2e-156 557.0 375 68.8
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-156 555.4 362 74.0
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 5.7e-154 548.1 411 63.7
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.4e-152 543.5 300 82.0
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 3.5e-151 538.9 404 60.1
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.9e-151 538.1 407 61.9
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.1e-148 528.1 373 67.6
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 5.7e-146 521.5 414 64.0
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.8e-146 520.8 368 67.7
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.1e-144 517.3 365 67.1
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-144 516.2 365 67.1
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 7.7e-143 511.1 420 61.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.6e-142 508.1 410 63.4
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 8.6e-142 507.7 442 58.8
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 4.7e-140 501.9 335 67.2
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 8.0e-140 501.1 380 61.6
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 9.5e-133 477.6 419 54.9
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.7e-129 466.8 411 54.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 1.9e-128 463.4 306 71.2
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 2.0e-127 459.9 414 54.1
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-127 459.1 247 84.2
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.0e-126 457.6 345 63.5
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.5e-125 453.0 368 57.3
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 3.3e-125 452.6 345 63.2
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.3e-125 451.4 368 57.6
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 9.8e-122 441.0 323 65.3
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.5e-119 432.6 355 60.8
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.3e-118 429.9 390 56.2
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 1.1e-117 427.6 409 51.6
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.5e-117 426.4 320 62.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-116 421.8 351 63.0
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-114 416.8 272 73.5
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.1e-109 401.0 445 46.3
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.2e-106 391.0 274 67.9
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.5e-106 390.6 253 73.9
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.3e-102 377.5 283 58.7
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.1e-99 367.9 258 68.2
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 9.9e-98 361.3 417 44.6
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-97 358.6 202 83.7
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.9e-95 351.7 202 81.2
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-93 347.4 201 81.6
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 2.8e-92 343.2 200 75.5
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.4e-91 340.9 199 76.4
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.8e-78 297.4 167 80.8
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 2.1e-76 290.4 296 45.3
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.1e-75 288.1 402 40.5
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-68 264.2 194 67.5
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 7.7e-66 255.4 165 70.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-65 255.0 144 81.2
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-65 255.0 144 81.2
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-65 255.0 144 81.2
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-64 251.5 144 80.6
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-61 240.7 154 74.0
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.2e-60 235.3 187 63.1
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 3.6e-55 219.9 261 47.9
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-48 197.6 96 91.7
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.1e-47 194.1 115 75.7
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-36 156.4 136 61.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 2.0e-34 151.0 86 76.7
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 7.7e-34 149.1 108 65.7
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.5e-33 146.0 100 66.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 5.7e-29 132.9 84 67.9
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-27 127.9 74 79.7
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.0e-26 124.4 84 67.9
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.8e-26 122.5 66 83.3
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-17 94.7 59 69.5
Gohir.A03G000001 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-16 91.7 63 73.0
Gohir.D03G178375 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.3e-16 90.1 67 62.7
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 2.1e-15 87.8 60 71.7
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 2.0e-13 81.3 107 41.1
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 5.8e-13 79.7 58 69.0
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.3e-09 68.6 237 27.4
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.7e-09 68.2 43 65.1
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 1.2e-07 62.0 36 80.6
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 3.6e-07 60.5 67 50.7


User provided reference genes

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