Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 3633.2 1977 100.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 3190.6 1928 89.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 3165.9 1928 88.5
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 3143.6 1990 87.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 3136.7 1928 88.3
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 3100.1 1788 89.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2934.1 1980 83.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2719.9 1922 76.4
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2681.7 1936 75.0
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2672.9 1955 75.1
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2672.1 1933 74.9
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2658.6 1940 75.6
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2647.8 1944 74.7
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2615.9 1942 74.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2610.9 1936 74.0
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2585.4 1937 73.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2582.7 1903 75.2
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2559.6 1939 73.5
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2559.3 1936 72.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2553.5 1937 73.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2552.3 1958 72.4
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2549.6 1933 72.7
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2549.2 1935 71.9
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2546.5 1932 72.9
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2543.5 1932 72.7
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2543.1 1931 72.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2537.7 1936 72.8
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2537.7 1935 72.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2535.8 1935 72.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2521.9 1786 74.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2512.3 1908 72.7
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2511.9 2039 68.5
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2507.6 1949 70.9
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2506.9 1969 70.3
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2504.2 1942 71.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2503.4 1936 72.1
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2501.1 1937 71.9
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2492.2 1820 73.2
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2491.5 1937 71.7
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2477.2 1942 71.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2462.6 1933 68.9
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2442.2 1934 69.3
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2409.8 1944 68.7
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2402.9 1934 69.8
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2398.2 1899 69.6
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2397.9 1924 69.9
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2397.5 1933 69.7
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2395.9 1937 69.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2394.0 1938 69.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2375.1 1935 68.0
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2370.1 1923 68.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2361.6 1857 70.1
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2358.6 1924 68.1
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2354.7 1911 68.3
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2346.6 1902 68.5
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2343.2 1939 68.2
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2340.8 1930 66.7
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2340.8 1937 68.9
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2337.0 1952 67.4
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2317.7 1929 66.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2313.1 1926 66.2
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2308.9 1823 68.5
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2304.6 1943 67.1
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2302.7 1907 67.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2293.8 1925 66.2
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2275.0 1891 66.8
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2265.0 1947 64.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2265.0 1907 67.3
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2256.9 1936 65.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2254.6 1823 68.0
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2230.7 1815 66.2
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2225.3 1783 66.6
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2212.2 1938 64.8
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2195.2 1930 64.6
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2191.8 1937 65.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2167.9 1938 63.6
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2147.5 1920 63.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2130.5 1861 63.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2128.6 1971 63.4
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2120.9 1690 68.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2115.1 1940 61.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2103.9 1942 61.5
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2100.9 1940 63.0
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2053.5 1965 60.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 2031.5 1877 60.4
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2023.8 1907 59.0
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 2014.2 1997 59.6
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 2006.9 1939 60.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2006.1 1885 59.1
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2000.7 1881 59.2
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1992.6 1882 59.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1988.0 1973 59.4
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1988.0 1891 59.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1988.0 1973 59.4
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1987.2 1879 59.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1986.8 1884 59.0
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1986.8 1879 59.6
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1986.5 1879 59.2
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1985.7 1893 59.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1981.5 1727 63.9
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1976.4 1943 59.8
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1968.7 1949 58.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1968.4 1880 59.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1957.2 1878 59.2
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1825.4 1959 56.4
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1721.8 1238 73.5
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1702.2 1957 52.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1659.0 1231 73.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1650.2 1860 52.5
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1608.2 1942 51.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1593.9 1484 62.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1585.1 1466 61.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1552.7 1954 49.8
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1540.8 1904 49.2
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1540.8 1904 49.2
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1534.2 1234 69.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1511.1 1962 49.7
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1505.3 1865 49.4
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1459.1 1506 57.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1357.8 1076 69.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1291.6 1782 45.9
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1285.4 1338 57.8
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1236.9 1035 66.2
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1233.0 922 71.3
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1088.6 864 68.5
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.2e-303 1046.2 837 69.3
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 5.1e-301 1038.9 1453 48.0
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 3.2e-287 993.0 1622 41.9
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.2e-271 939.5 809 63.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.2e-263 913.3 1836 36.0
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.9e-261 906.4 883 57.2
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.5e-220 769.2 611 68.2
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 7.6e-196 689.5 720 54.0
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.4e-195 686.0 664 56.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.8e-190 671.0 653 55.7
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 2.3e-184 651.4 497 67.0
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.5e-172 610.5 453 74.4
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 5.5e-170 603.6 626 56.1
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.1e-161 573.5 554 58.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.0e-152 546.2 554 58.5
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.7e-137 495.0 458 60.5
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.5e-124 451.1 422 59.7
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 5.0e-115 421.0 1247 28.8
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.7e-92 345.5 871 33.5
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 4.9e-86 324.7 2067 23.0
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.0e-83 317.0 446 45.7
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.8e-81 308.9 650 34.6
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.0e-76 291.2 470 39.6
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.1e-74 287.0 272 69.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-74 286.6 326 54.9
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.6e-73 283.1 406 43.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.1e-68 266.2 199 71.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.1e-61 243.8 187 89.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.7e-57 228.8 273 49.1
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 7.4e-50 204.5 238 54.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.5e-34 153.7 225 47.6
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.7e-22 113.6 172 41.9
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 2.0e-18 100.1 126 69.0
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.4e-16 94.0 58 74.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.0e-15 90.1 96 53.1
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 7.7e-15 88.2 70 60.0
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 8.5e-14 84.7 121 41.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.5e-13 83.2 52 65.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.4e-08 67.4 33 84.8
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 9.1e-08 64.7 44 72.7
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 2.7e-07 63.2 42 76.2
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 3.5e-07 62.8 224 26.8
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.5e-07 62.4 52 53.8
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 7.7e-07 61.6 224 27.7
BcaC02g11420 Brassica carinata HOM05D003335 ORTHO05D003853 1.3e-06 60.8 224 27.7
A05p12180 Brassica napus HOM05D003335 ORTHO05D003853 1.3e-06 60.8 224 27.7
C04p15750 Brassica napus HOM05D003335 ORTHO05D003853 1.3e-06 60.8 224 27.7
BolC4t23145H Brassica oleracea HOM05D003335 ORTHO05D003853 1.3e-06 60.8 224 27.7
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 1.7e-06 60.5 43 67.4
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 5.0e-06 58.9 224 27.2
BcaC02g07839 Brassica carinata HOM05D003335 ORTHO05D003853 6.5e-06 58.5 224 26.8
C04p62760 Brassica napus HOM05D003335 ORTHO05D003853 6.5e-06 58.5 224 26.8
BolC4t27760H Brassica oleracea HOM05D003335 ORTHO05D003853 6.5e-06 58.5 224 26.8
A04p25630 Brassica napus HOM05D003335 ORTHO05D003853 8.6e-06 58.2 224 26.8
BraA04t18067Z Brassica rapa HOM05D003335 ORTHO05D003853 8.6e-06 58.2 224 26.8
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 8.6e-06 58.2 224 27.2


User provided reference genes

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