Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.7e-180 634.8 331 100.0
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 4.6e-162 574.7 333 90.1
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 4.6e-146 521.5 333 84.1
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 4.3e-144 515.0 339 78.5
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 4.6e-138 495.0 334 75.7
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.7e-137 493.0 336 75.9
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 6.6e-137 491.1 336 77.7
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 5.6e-136 488.0 330 75.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 7.3e-136 487.6 338 75.4
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 7.3e-136 487.6 303 78.5
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 9.6e-136 487.3 332 73.8
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.2e-135 486.9 328 75.6
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-135 485.7 336 75.3
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.7e-135 485.0 302 79.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 6.2e-135 484.6 332 76.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.4e-134 483.4 335 74.6
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.4e-134 483.4 302 83.4
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.4e-134 483.4 302 83.4
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.4e-134 482.6 300 78.3
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 3.1e-134 482.3 328 79.0
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 3.1e-134 482.3 328 79.0
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 3.1e-134 482.3 324 74.7
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 4.0e-134 481.9 335 74.6
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.6e-133 479.2 338 74.3
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 3.4e-133 478.8 335 72.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 4.9e-132 474.9 317 75.1
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 6.4e-132 474.6 334 76.3
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.9e-131 473.0 279 82.1
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 4.6e-130 468.4 336 73.2
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 4.6e-130 468.4 336 74.1
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.0e-130 468.0 322 74.2
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.0e-129 467.2 329 73.3
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-129 465.7 310 75.2
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.0e-129 465.7 337 70.6
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.9e-128 463.0 330 71.8
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 9.6e-128 460.7 338 70.7
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 9.6e-128 460.7 338 73.4
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.1e-127 459.5 340 71.2
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 3.6e-127 458.8 333 71.8
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 6.2e-127 458.0 328 71.0
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.4e-126 456.1 331 70.7
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.1e-126 455.7 312 73.4
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.2e-125 453.8 311 73.6
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.2e-125 453.8 331 70.1
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.5e-125 453.4 322 71.7
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.0e-125 453.0 335 70.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.6e-125 452.6 329 71.4
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 3.4e-125 452.2 301 78.7
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 3.4e-125 452.2 331 69.8
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.9e-125 450.7 336 69.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 9.9e-125 450.7 331 76.4
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 3.8e-124 448.7 329 69.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 3.8e-124 448.7 333 70.3
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.4e-123 446.8 336 69.9
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 2.4e-123 446.0 349 67.0
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.2e-123 445.7 311 72.0
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.2e-122 443.7 306 74.5
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.1e-122 443.0 305 73.4
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.7e-122 442.6 323 71.2
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 3.5e-122 442.2 328 74.4
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 9.6e-120 434.1 327 75.8
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.3e-119 433.7 323 69.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.1e-119 433.0 301 76.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.1e-119 433.0 307 75.2
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 2.8e-119 432.6 220 93.2
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 4.8e-119 431.8 340 68.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 4.8e-119 431.8 260 78.5
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 6.2e-119 431.4 331 67.7
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 8.1e-119 431.0 289 73.4
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-118 430.3 253 81.8
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 3.1e-118 429.1 340 68.2
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.2e-117 427.2 220 90.5
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 7.6e-117 424.5 283 74.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.9e-116 422.5 338 66.3
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.4e-115 420.2 335 69.3
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.3e-113 413.7 330 71.5
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.3e-113 412.9 341 67.2
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 6.7e-113 411.4 345 64.6
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.6e-111 406.8 249 77.5
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 6.2e-111 404.8 342 63.5
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 6.2e-111 404.8 219 85.4
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 6.9e-110 401.4 280 70.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 7.6e-109 397.9 329 65.3
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 5.1e-105 385.2 206 88.3
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 5.7e-104 381.7 344 60.5
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.1e-102 377.5 342 60.2
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.9e-100 369.4 315 64.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 4.3e-96 355.5 213 81.2
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.4e-94 349.7 332 60.2
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.6e-93 346.3 336 58.9
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 5.9e-93 345.1 332 63.0
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 2.9e-92 342.8 221 84.6
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 8.5e-92 341.3 219 71.2
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 8.5e-92 341.3 219 71.2
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 5.5e-91 338.6 237 72.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 5.5e-91 338.6 354 52.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 3.9e-89 332.4 482 44.4
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 5.1e-89 332.0 257 61.1
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 3.1e-86 322.8 271 64.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 6.5e-84 315.1 171 86.5
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 2.1e-82 310.1 220 63.6
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 5.3e-78 295.4 276 52.5
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.6e-77 293.9 167 83.8
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 5.7e-72 275.4 281 50.9
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 4.5e-69 265.8 144 87.5
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.3e-65 253.4 218 59.6
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.7e-61 238.4 211 59.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.7e-60 237.3 208 54.8
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.5e-59 233.4 248 55.6
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 3.0e-57 226.5 214 62.1
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 6.3e-55 218.8 189 65.1
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.6e-45 186.0 164 61.0
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 4.7e-42 176.0 97 82.5
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.9e-38 164.1 109 74.3
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 5.8e-32 142.5 175 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.4e-31 139.0 155 50.3
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.5e-27 127.1 62 91.9
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.2e-22 110.2 104 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 2.1e-21 107.5 129 48.8
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.4e-15 85.9 43 95.3
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-10 69.3 68 55.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-10 69.3 68 55.9
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.4e-08 63.5 160 33.8
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 3.8e-07 60.1 39 71.8


User provided reference genes

Program Settings