Gene: Sopen04g025710
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g025710
- Transcript Identifier Sopen04g025710.1
- Gene Type Coding gene
- Location Spenn-ch04 : 66652424-66657896 : positive
Gene Family Information
- ID HOM05D006408
- #Genes/#Species 124/94
- Phylogenetic origin
- ID ORTHO05D008038
- #Genes/#Species 124/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen04g025710.1
Descriptions
- Description Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. | plastid transcriptionally active 6 (PTAC6) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter | LOCATED IN: plastid chromosome, nucleoid | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT1G21600 |
| GO:0042793 | ISO | PLAZA Integrative Orthology | plastid transcription | AT1G21600 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT1G21600 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G21600 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000427 | IEA | InterPro | plastid-encoded plastid RNA polymerase complex | |
| GO:0009508 | ISO | PLAZA Integrative Orthology | plastid chromosome | AT1G21600 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT1G21600 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | AT1G21600 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044710 | PLASTID TRANSCRIPTIONALLY ACTIVE protein 6 |
| Mapman id | Description |
|---|---|
| 15.6.1.2.2.8 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP8/TAC6 |