Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 5.0e-168 594.3 297 100.0
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.2e-161 573.2 297 95.3
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 4.2e-159 564.7 297 94.3
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 7.2e-143 510.8 299 84.9
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 4.7e-142 508.1 297 83.8
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 7.5e-140 500.7 297 82.8
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 3.7e-139 498.4 299 83.9
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 9.2e-138 493.8 299 82.6
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 1.6e-137 493.0 257 94.9
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 4.5e-137 491.5 297 84.8
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 7.8e-137 490.7 298 82.2
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.7e-136 489.6 297 82.5
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 3.8e-136 488.4 296 80.4
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 2.5e-135 485.7 298 81.9
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 8.0e-134 480.7 297 81.1
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 6.8e-133 477.6 298 79.2
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 8.9e-133 477.2 299 77.9
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 7.5e-132 474.2 297 78.1
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 2.2e-131 472.6 295 79.7
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 7.0e-130 467.6 297 77.8
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 1.2e-129 466.8 301 78.1
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 3.5e-129 465.3 296 78.4
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 6.0e-129 464.5 299 79.9
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 1.3e-128 463.4 301 77.4
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.7e-128 463.0 300 77.0
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 3.9e-128 461.8 301 76.7
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 6.6e-128 461.1 324 76.9
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 8.6e-128 460.7 301 76.7
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.1e-127 460.3 290 78.3
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.5e-127 459.9 302 77.8
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.9e-127 459.5 301 76.4
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 2.5e-127 459.1 302 77.2
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 5.6e-127 458.0 301 76.4
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 5.6e-127 458.0 299 77.6
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 7.3e-127 457.6 301 76.4
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 7.3e-127 457.6 298 76.8
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.2e-126 456.8 300 78.3
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 1.2e-126 456.8 298 76.2
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 1.6e-126 456.4 302 75.8
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 1.6e-126 456.4 312 74.0
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 4.7e-126 454.9 297 76.8
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 6.2e-126 454.5 302 76.5
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 8.0e-126 454.1 332 70.2
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 1.1e-125 453.8 303 75.2
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 4.0e-125 451.8 273 80.2
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 4.0e-125 451.8 309 73.5
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 5.2e-125 451.4 302 74.8
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 4.9e-123 444.9 304 73.0
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 7.0e-122 441.0 301 75.1
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.1e-121 439.5 316 72.8
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.7e-121 439.1 301 74.8
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 3.5e-121 438.7 293 73.7
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 6.0e-121 438.0 316 72.5
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.3e-120 436.8 298 72.5
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 2.3e-120 436.0 295 73.6
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.9e-120 435.3 292 72.3
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 2.5e-119 432.6 291 72.5
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 4.3e-119 431.8 295 72.5
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 7.3e-119 431.0 302 74.2
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.6e-118 429.9 294 71.8
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 6.2e-118 427.9 273 77.3
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 2.3e-117 426.0 294 71.8
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 2.3e-117 426.0 296 73.3
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 4.0e-117 425.2 321 67.9
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 6.8e-117 424.5 321 67.9
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.5e-116 423.3 294 71.8
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 2.0e-116 422.9 299 72.9
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 2.0e-116 422.9 292 70.9
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 3.4e-116 422.2 295 72.2
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.3e-115 420.2 294 72.1
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 2.2e-115 419.5 299 72.6
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 2.9e-115 419.1 294 71.8
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.7e-115 418.7 297 72.7
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 8.3e-115 417.5 279 76.3
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 4.1e-114 415.2 296 72.3
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 4.1e-114 415.2 294 71.1
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.1e-114 414.5 318 67.3
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.6e-113 411.8 212 94.3
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 1.7e-112 409.8 290 72.8
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.3e-112 409.5 300 71.3
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.6e-112 407.5 280 73.9
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.4e-109 400.2 283 73.1
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 3.4e-108 395.6 241 80.9
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.1e-106 390.6 296 68.9
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 1.2e-105 387.1 305 63.9
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 3.1e-101 372.5 278 69.1
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 9.0e-101 370.9 293 63.1
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 3.2e-98 362.5 300 62.3
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 4.6e-97 358.6 305 63.3
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 5.6e-95 351.7 248 70.2
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 2.4e-93 346.3 293 63.8
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 4.5e-92 342.0 211 79.1
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.1e-90 337.4 247 69.2
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 1.0e-88 330.9 241 71.4
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 7.4e-87 324.7 243 70.4
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 1.3e-86 323.9 214 75.2
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 8.1e-86 321.2 238 70.2
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 1.4e-85 320.5 302 54.6
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 6.4e-83 311.6 221 71.9
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 4.2e-82 308.9 297 52.5
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.8e-80 303.5 435 46.0
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 3.0e-80 302.8 288 59.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.1e-74 284.3 248 60.5
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 1.1e-71 274.2 219 67.1
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.6e-70 270.4 237 63.3
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 4.8e-70 268.9 252 59.5
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.7e-67 260.4 149 82.6
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 2.2e-67 260.0 178 74.7
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 2.1e-65 253.4 183 68.9
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 3.0e-64 249.6 316 44.3
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 2.8e-62 243.0 220 60.5
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 6.9e-61 238.4 200 67.0
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 3.4e-60 236.1 175 69.1
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.2e-57 227.6 232 58.6
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 2.4e-53 213.4 161 67.1
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 9.4e-50 201.4 134 73.9
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 6.7e-48 195.3 121 73.6
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 2.6e-47 193.4 111 77.5
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 3.6e-41 172.9 113 77.0
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 3.1e-37 159.8 284 35.9
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 9.1e-37 158.3 96 76.0
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 1.3e-35 154.5 85 82.4
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 9.4e-34 148.3 122 67.2
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.3e-30 137.9 258 35.7
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 4.8e-30 136.0 152 52.6
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 3.8e-27 126.3 69 85.5
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 4.2e-26 122.9 157 45.9
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 4.7e-25 119.4 338 28.4
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 2.3e-24 117.1 133 42.9
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 4.5e-20 102.8 92 60.9
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 2.1e-17 94.0 103 54.4
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.0e-12 77.4 89 52.8
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.3e-11 73.9 88 55.7
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 3.3e-10 70.1 31 87.1
Cfa016005 Carpinus fangiana HOM05D005614 ORTHO05D006759 4.7e-09 66.2 53 64.2
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.3e-08 63.9 54 59.3


User provided reference genes

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