Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 6.7e-51 203.8 105 100.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 4.5e-39 164.5 105 81.0
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 8.5e-38 160.2 104 78.8
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.5e-37 158.7 105 76.2
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.5e-37 158.7 105 76.2
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 5.5e-37 157.5 102 78.4
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 5.5e-37 157.5 105 76.2
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.2e-36 156.4 105 76.2
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 1.6e-36 156.0 105 74.3
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 1.6e-36 156.0 105 74.3
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.1e-36 155.6 102 77.5
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 2.7e-36 155.2 105 74.3
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 3.6e-36 154.8 105 74.3
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.6e-36 154.8 102 76.5
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 6.1e-36 154.1 103 73.8
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 6.1e-36 154.1 105 72.4
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 6.1e-36 154.1 102 74.5
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 7.9e-36 153.7 102 75.5
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 7.9e-36 153.7 105 74.3
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.0e-35 153.3 102 74.5
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.0e-35 153.3 102 75.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.0e-35 153.3 101 75.2
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 1.4e-35 152.9 105 73.3
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.4e-35 152.9 102 75.5
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.4e-35 152.9 102 74.5
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.8e-35 152.5 105 72.4
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 1.8e-35 152.5 105 73.3
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.8e-35 152.5 105 72.4
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 1.8e-35 152.5 105 74.3
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 3.0e-35 151.8 105 74.3
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 3.0e-35 151.8 102 74.5
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 3.9e-35 151.4 105 71.4
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 5.1e-35 151.0 105 72.4
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 5.1e-35 151.0 105 72.4
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 5.1e-35 151.0 105 71.4
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.7e-35 150.6 103 73.8
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 8.8e-35 150.2 105 71.4
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.1e-34 149.8 101 75.2
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.5e-34 149.4 102 71.6
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.5e-34 149.4 102 74.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 2.0e-34 149.1 102 71.6
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 2.0e-34 149.1 105 70.5
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 2.6e-34 148.7 102 72.5
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 2.6e-34 148.7 102 73.5
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 3.3e-34 148.3 102 71.6
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 3.3e-34 148.3 102 72.5
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 3.3e-34 148.3 101 73.3
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 3.3e-34 148.3 102 72.5
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 3.3e-34 148.3 105 73.3
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 3.3e-34 148.3 102 72.5
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 3.3e-34 148.3 102 69.6
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 4.4e-34 147.9 105 70.5
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 4.4e-34 147.9 105 70.5
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.4e-34 147.9 102 72.5
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 4.4e-34 147.9 102 70.6
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 4.4e-34 147.9 102 70.6
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 4.4e-34 147.9 101 72.3
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 9.7e-34 146.7 102 70.6
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 9.7e-34 146.7 102 70.6
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.7e-33 146.0 105 72.4
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.2e-33 145.6 102 71.6
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 2.2e-33 145.6 102 70.6
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 2.2e-33 145.6 102 72.5
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 2.2e-33 145.6 107 69.2
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.7e-33 144.8 102 71.6
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 4.8e-33 144.4 102 69.6
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 4.8e-33 144.4 102 69.6
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 4.8e-33 144.4 102 69.6
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 4.8e-33 144.4 102 69.6
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 6.3e-33 144.1 102 69.6
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 8.2e-33 143.7 102 70.6
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.1e-32 143.3 102 68.6
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.1e-32 143.3 102 68.6
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 1.4e-32 142.9 108 68.5
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.4e-32 142.9 102 69.6
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 2.4e-32 142.1 128 61.7
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 3.1e-32 141.7 105 68.6
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.1e-32 141.4 107 69.2
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 4.1e-32 141.4 111 65.8
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 5.3e-32 141.0 103 70.9
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 7.0e-32 140.6 107 69.2
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.2e-31 139.8 103 67.0
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.6e-31 139.4 102 67.6
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 1.6e-31 139.4 102 67.6
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 2.0e-31 139.0 102 68.6
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 2.6e-31 138.7 102 66.7
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 2.6e-31 138.7 101 70.3
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.5e-31 138.3 101 67.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.5e-31 138.3 101 67.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.5e-31 138.3 101 67.3
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 3.5e-31 138.3 102 66.7
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 5.9e-31 137.5 84 81.0
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 5.9e-31 137.5 84 81.0
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 7.7e-31 137.1 84 79.8
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.0e-30 136.7 123 60.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 2.9e-30 135.2 91 74.7
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 3.8e-30 134.8 102 65.7
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.1e-29 133.3 91 71.4
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.7e-25 119.4 104 55.8
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 1.4e-24 116.3 101 60.4
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.7e-23 112.1 75 72.0
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 3.5e-23 111.7 91 58.2
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 7.7e-23 110.5 102 58.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-22 109.8 82 69.5
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.1e-21 106.7 88 61.4
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.2e-18 96.7 103 55.3
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 9.8e-18 93.6 60 78.3
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 9.8e-18 93.6 66 69.7
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 1.4e-16 89.7 106 52.8
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 6.5e-14 80.9 104 46.2
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 7.2e-13 77.4 91 45.1
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 3.7e-09 65.1 48 64.6
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.1e-08 63.5 51 56.9
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 7.0e-08 60.8 42 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 4.5e-07 58.2 48 54.2


User provided reference genes

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