Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 5.0e-108 394.4 196 100.0
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 2.4e-62 242.7 128 94.5
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 4.4e-56 221.9 128 82.0
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 5.8e-56 221.5 128 82.0
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.6e-56 221.1 128 82.8
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 4.6e-53 211.8 128 84.4
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 5.1e-36 155.2 86 86.0
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 3.0e-28 129.4 145 51.7
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 1.1e-27 127.5 137 54.0
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 1.5e-27 127.1 92 67.4
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 4.3e-27 125.6 92 67.4
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 5.6e-27 125.2 135 53.3
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 1.3e-26 124.0 137 53.3
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.8e-26 122.9 92 68.5
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 2.8e-26 122.9 92 68.5
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 2.8e-26 122.9 92 68.5
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 4.8e-26 122.1 92 67.4
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 8.2e-26 121.3 92 65.2
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 3.1e-25 119.4 141 48.9
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 4.0e-25 119.0 92 67.4
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 4.0e-25 119.0 92 67.4
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.0e-25 119.0 140 51.4
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 6.9e-25 118.2 138 47.1
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 1.2e-24 117.5 145 51.7
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.0e-24 116.7 130 54.6
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 2.0e-24 116.7 130 54.6
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 2.0e-24 116.7 140 52.1
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 2.0e-24 116.7 115 57.4
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 4.5e-24 115.5 136 50.7
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.3e-23 114.0 136 49.3
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.3e-23 114.0 136 49.3
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.7e-23 113.6 120 54.2
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 1.7e-23 113.6 114 57.0
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 1.7e-23 113.6 148 47.3
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 2.9e-23 112.8 126 55.6
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 3.8e-23 112.5 114 55.3
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 4.9e-23 112.1 128 51.6
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 6.5e-23 111.7 120 54.2
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 6.5e-23 111.7 95 64.2
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 6.5e-23 111.7 137 48.9
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 8.4e-23 111.3 91 63.7
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 8.4e-23 111.3 129 51.9
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 1.1e-22 110.9 76 71.1
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 1.1e-22 110.9 132 48.5
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 1.1e-22 110.9 129 51.2
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 1.4e-22 110.5 153 50.3
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.9e-22 110.2 118 54.2
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.2e-22 109.4 71 71.8
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.2e-22 109.4 130 50.8
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.2e-22 109.0 71 71.8
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.2e-22 109.0 128 51.6
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 7.1e-22 108.2 140 47.9
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.1e-22 108.2 126 52.4
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 7.1e-22 108.2 128 52.3
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 9.3e-22 107.8 99 57.6
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 1.6e-21 107.1 126 52.4
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.6e-21 107.1 126 50.0
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 2.1e-21 106.7 134 48.5
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 2.7e-21 106.3 135 48.9
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 2.7e-21 106.3 132 46.2
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 2.7e-21 106.3 80 66.2
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 3.5e-21 105.9 111 55.9
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 3.5e-21 105.9 147 46.3
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.6e-21 105.5 126 51.6
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 6.0e-21 105.1 135 47.4
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 7.9e-21 104.8 132 52.3
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 1.0e-20 104.4 131 45.8
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 1.0e-20 104.4 125 50.4
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.0e-20 104.4 126 49.2
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.0e-20 104.4 113 53.1
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.0e-20 104.4 68 72.1
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.3e-20 104.0 134 47.0
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 2.3e-20 103.2 124 53.2
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 3.0e-20 102.8 129 44.2
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 3.9e-20 102.4 109 48.6
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 6.7e-20 101.7 137 48.2
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 6.7e-20 101.7 128 50.0
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 6.7e-20 101.7 131 49.6
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 1.1e-19 100.9 133 49.6
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 1.1e-19 100.9 134 47.0
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.5e-19 100.5 114 47.4
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 1.5e-19 100.5 71 70.4
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 1.9e-19 100.1 129 45.7
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.9e-19 100.1 128 48.4
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 2.5e-19 99.8 148 45.9
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 3.3e-19 99.4 71 67.6
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 3.3e-19 99.4 81 63.0
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.3e-19 99.4 129 49.6
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 4.3e-19 99.0 133 46.6
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 7.4e-19 98.2 68 70.6
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 9.7e-19 97.8 68 66.2
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.6e-18 97.1 99 54.5
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 2.2e-18 96.7 103 56.3
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.8e-18 96.3 118 50.8
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 2.8e-18 96.3 107 53.3
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 4.8e-18 95.5 101 52.5
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 4.8e-18 95.5 82 62.2
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 4.8e-18 95.5 69 63.8
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 4.8e-18 95.5 68 63.2
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 6.3e-18 95.1 68 69.1
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 6.3e-18 95.1 75 62.7
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 8.2e-18 94.7 99 50.5
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.1e-17 94.4 134 44.0
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 1.1e-17 94.4 127 45.7
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 1.4e-17 94.0 98 56.1
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 1.8e-17 93.6 122 50.0
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.1e-17 92.4 68 70.6
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 6.9e-17 91.7 117 49.6
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.2e-16 90.9 127 44.9
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 1.5e-16 90.5 133 40.6
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.0e-16 90.1 138 43.5
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 3.4e-16 89.4 71 66.2
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 5.9e-16 88.6 145 40.7
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.3e-15 87.4 81 58.0
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.3e-15 87.4 83 57.8
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 1.7e-15 87.0 74 58.1
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 1.7e-15 87.0 127 44.9
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 3.8e-15 85.9 104 48.1
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 6.5e-15 85.1 68 58.8
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.4e-14 84.0 71 62.0
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.4e-14 84.0 83 54.2
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 5.5e-14 82.0 89 51.7
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 5.5e-14 82.0 69 58.0
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 7.2e-14 81.6 71 57.7
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 2.7e-13 79.7 134 36.6
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 5.3e-09 65.5 33 84.8
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 5.3e-09 65.5 33 84.8
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 5.3e-09 65.5 33 84.8
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.2e-08 64.3 37 75.7
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.7e-07 60.5 33 75.8
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 5.0e-07 58.9 137 28.5


User provided reference genes

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