Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 5.7e-164 580.9 295 100.0
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.2e-113 413.7 275 77.5
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.7e-112 409.8 275 76.4
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 1.7e-112 409.8 275 76.4
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 7.0e-106 387.9 268 75.4
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 1.0e-88 330.9 271 59.4
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 1.3e-88 330.5 272 60.3
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 8.6e-88 327.8 273 59.0
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 9.5e-87 324.3 268 59.3
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 2.8e-86 322.8 271 59.0
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.4e-85 320.5 271 57.2
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 6.8e-85 318.2 272 57.7
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 1.2e-84 317.4 271 59.0
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 1.5e-84 317.0 274 59.9
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 9.9e-84 314.3 263 57.8
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 4.9e-83 312.0 274 58.4
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 4.9e-83 312.0 274 58.4
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 8.4e-83 311.2 275 57.5
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 2.7e-81 306.2 271 55.0
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 3.9e-80 302.4 267 56.6
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 8.7e-80 301.2 274 55.5
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 1.1e-79 300.8 268 56.7
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 2.5e-79 299.7 268 57.1
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 2.5e-79 299.7 271 55.7
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 9.6e-79 297.7 268 57.1
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 1.6e-78 297.0 263 56.3
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 2.1e-78 296.6 271 55.0
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 1.1e-77 294.3 267 55.4
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 1.8e-77 293.5 234 61.5
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 2.4e-77 293.1 271 53.9
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 2.0e-76 290.0 277 54.2
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 2.0e-76 290.0 276 52.9
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 3.4e-76 289.3 273 53.1
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 5.8e-76 288.5 268 55.6
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 7.6e-76 288.1 267 53.2
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 1.3e-75 287.3 267 53.2
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 1.3e-75 287.3 267 53.2
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 2.9e-75 286.2 276 54.7
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 4.9e-75 285.4 263 53.6
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 4.9e-75 285.4 274 52.2
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 1.1e-74 284.3 267 52.8
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 1.1e-74 284.3 267 52.8
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 1.1e-74 284.3 277 52.3
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 1.4e-74 283.9 263 54.4
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 2.4e-74 283.1 263 51.7
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 2.4e-74 283.1 266 54.1
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 3.2e-74 282.7 267 52.8
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 1.6e-73 280.4 274 51.8
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 2.1e-73 280.0 255 54.9
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 2.1e-73 280.0 271 53.1
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 2.1e-73 280.0 274 51.8
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 2.7e-73 279.6 262 54.2
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 4.6e-73 278.9 274 51.1
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 1.0e-72 277.7 262 53.8
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 1.7e-72 276.9 232 59.5
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 2.3e-72 276.6 228 60.5
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 8.7e-72 274.6 262 53.8
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 8.7e-72 274.6 273 52.7
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 1.5e-71 273.9 272 52.9
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 9.6e-71 271.2 272 49.3
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 9.6e-71 271.2 269 49.4
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 1.8e-69 266.9 275 50.9
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 2.4e-69 266.5 272 51.5
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 6.9e-69 265.0 268 53.0
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 1.2e-68 264.2 269 49.4
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 1.2e-68 264.2 341 43.1
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 1.5e-68 263.8 265 50.6
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 7.6e-68 261.5 276 48.6
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 9.9e-68 261.2 272 50.4
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 3.8e-67 259.2 268 49.6
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 4.9e-67 258.8 272 50.7
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 4.9e-67 258.8 265 50.9
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 6.4e-67 258.5 272 50.4
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 1.9e-66 256.9 268 49.6
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 4.2e-66 255.8 272 50.0
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 5.4e-66 255.4 271 47.6
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 5.4e-66 255.4 265 48.3
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 5.4e-66 255.4 265 48.3
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 3.5e-65 252.7 196 59.7
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 4.6e-65 252.3 232 53.0
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 1.8e-64 250.4 224 56.2
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 8.7e-64 248.1 268 48.9
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.5e-63 247.3 269 48.3
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 3.3e-63 246.1 264 46.2
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 8.1e-62 241.5 267 47.6
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 4.0e-61 239.2 249 47.8
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 5.8e-60 235.3 262 48.5
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 9.9e-60 234.6 264 44.3
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 1.3e-59 234.2 268 45.9
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 7.1e-58 228.4 225 51.6
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 2.7e-57 226.5 202 56.4
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.3e-56 224.2 168 59.5
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 5.1e-56 222.2 316 40.5
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 1.2e-52 211.1 222 48.6
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 2.2e-51 206.8 271 43.9
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 3.3e-47 193.0 261 42.9
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 2.8e-46 189.9 201 49.8
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.0e-43 181.4 122 68.9
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 2.9e-43 179.9 176 52.3
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.3e-40 170.2 267 34.5
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 9.7e-39 164.9 264 34.8
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 1.3e-38 164.5 124 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 3.7e-38 162.9 297 32.0
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 5.0e-35 152.5 149 55.0
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 9.4e-34 148.3 126 52.4
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 2.7e-33 146.7 163 46.6
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 3.0e-32 143.3 154 52.6
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 3.0e-32 143.3 150 52.7
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.0e-31 140.6 233 35.2
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 1.4e-29 134.4 237 31.2
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.4e-29 134.4 175 39.4
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 7.7e-20 102.1 161 37.3
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.5e-18 97.8 98 50.0
Haze_09398 Corylus avellana HOM05D006561 ORTHO05D008097 4.1e-13 79.7 58 69.0
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 7.0e-13 79.0 121 31.4
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 9.1e-13 78.6 238 27.7
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.3e-11 74.7 89 37.1
Haze_09393 Corylus avellana HOM05D006561 ORTHO05D008097 1.1e-10 71.6 57 61.4
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 3.6e-09 66.6 115 29.6
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 3.4e-07 60.1 74 40.5
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 2.8e-06 57.0 102 35.3
Thecc.02G169600 Theobroma cacao HOM05D006561 ORTHO05D008097 2.8e-06 57.0 49 57.1


User provided reference genes

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