Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 2.9e-142 508.4 240 100.0
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.3e-121 439.9 240 87.1
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 2.6e-106 389.0 239 77.8
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 2.8e-105 385.6 237 78.5
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 7.0e-104 380.9 222 80.6
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 9.1e-104 380.6 237 77.2
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 1.2e-103 380.2 240 75.0
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 2.7e-103 379.0 246 72.4
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 3.5e-103 378.6 239 74.9
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.5e-103 378.6 242 71.9
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.7e-102 376.3 239 74.5
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.7e-102 376.3 238 73.9
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.9e-102 375.6 237 76.4
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 3.8e-102 375.2 238 72.3
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 8.5e-102 374.0 240 73.3
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 8.5e-102 374.0 234 74.4
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 1.5e-101 373.2 240 75.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.9e-101 372.9 240 72.9
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 3.2e-101 372.1 244 71.7
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 3.2e-101 372.1 222 74.8
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 3.2e-101 372.1 242 74.4
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 4.2e-101 371.7 240 72.9
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 7.2e-101 370.9 249 71.5
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 7.2e-101 370.9 240 72.9
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.6e-100 369.8 240 73.3
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 1.6e-100 369.8 236 73.3
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.6e-100 369.8 248 71.4
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 3.6e-100 368.6 241 72.6
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 6.1e-100 367.9 244 70.5
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 8.0e-100 367.5 231 72.3
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 1.4e-99 366.7 245 72.7
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 2.6e-98 362.5 237 72.6
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 3.4e-98 362.1 237 71.3
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 4.4e-98 361.7 228 71.9
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.2e-97 359.4 223 73.1
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 2.8e-97 359.0 231 71.9
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 8.3e-97 357.5 241 71.0
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.1e-96 357.1 242 69.0
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.1e-96 357.1 235 69.4
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 1.4e-96 356.7 226 73.0
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 5.4e-96 354.8 242 70.2
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 7.0e-96 354.4 242 68.6
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 9.2e-96 354.0 223 71.7
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 7.8e-95 350.9 236 69.1
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 7.8e-95 350.9 247 66.8
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.9e-93 346.3 229 67.7
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 2.5e-93 345.9 226 71.7
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 2.5e-93 345.9 226 71.7
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 2.5e-93 345.9 226 71.7
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 2.5e-93 345.9 226 71.7
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 4.3e-93 345.1 248 65.7
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 4.3e-93 345.1 248 65.7
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 7.3e-93 344.4 235 67.2
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 8.0e-92 340.9 227 68.7
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.0e-91 338.6 228 68.9
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.2e-91 338.2 204 75.0
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 1.5e-90 336.7 223 70.0
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 2.0e-90 336.3 242 67.8
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 5.7e-90 334.7 213 70.0
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 7.5e-90 334.3 243 65.0
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 3.7e-89 332.0 221 67.9
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 8.3e-89 330.9 237 65.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 1.1e-88 330.5 224 67.4
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.4e-88 330.1 241 64.3
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 3.2e-88 328.9 218 70.2
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 5.4e-88 328.2 224 70.1
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 7.8e-87 324.3 203 72.4
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 1.0e-86 323.9 228 65.8
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.3e-86 323.6 206 71.4
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 2.3e-86 322.8 232 64.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 3.0e-86 322.4 237 64.6
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 5.0e-86 321.6 241 63.5
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 1.5e-85 320.1 248 62.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.5e-85 320.1 232 64.2
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.9e-85 319.7 240 62.5
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 5.6e-85 318.2 213 68.1
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 5.6e-85 318.2 215 66.5
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 5.6e-85 318.2 231 64.5
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 3.6e-84 315.5 239 62.3
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 1.8e-83 313.2 216 65.3
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 5.8e-82 308.1 264 56.1
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 6.4e-81 304.7 214 68.7
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 6.4e-81 304.7 219 65.8
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 1.9e-80 303.1 202 69.3
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 4.1e-80 302.0 221 65.2
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 6.8e-75 284.6 169 80.5
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.7e-73 280.0 181 70.7
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 9.2e-72 274.2 159 76.1
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.1e-71 273.1 169 76.3
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 2.1e-71 273.1 197 69.5
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.7e-71 272.7 157 73.9
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 3.0e-70 269.2 166 69.9
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 4.3e-69 265.4 240 57.1
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.4e-64 250.4 162 70.4
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.5e-63 245.7 178 61.8
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 8.1e-60 234.6 165 67.9
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.4e-59 233.0 170 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 3.0e-54 216.1 290 41.0
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 3.5e-47 192.6 163 62.0
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 6.7e-46 188.3 257 39.3
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 4.3e-45 185.7 227 44.5
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 9.0e-43 177.9 112 68.8
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.2e-40 169.1 114 73.7
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 6.2e-36 155.2 142 52.8
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 2.9e-33 146.4 167 46.1
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 5.5e-32 142.1 112 67.9
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 4.6e-31 139.0 187 40.6
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.0e-18 97.1 73 58.9
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 2.6e-18 96.7 64 81.2
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 7.7e-18 95.1 73 60.3
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.7e-17 94.0 68 75.0
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.2e-15 87.8 96 52.1
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.5e-13 80.9 56 60.7
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 5.7e-13 79.0 120 37.5
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 2.8e-12 76.6 118 37.3
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 3.1e-11 73.2 52 57.7
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.1e-08 64.7 115 35.7
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 1.4e-06 57.8 48 56.2
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.8e-06 57.4 172 29.1


User provided reference genes

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