Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G134400 Theobroma cacao HOM05D021816 ORTHO05D010786 4.1e-102 374.8 197 100.0
Duzib192G0687 Durio zibethinus HOM05D021816 ORTHO05D010786 1.6e-50 203.4 197 60.9
Gohir.A06G141400 Gossypium hirsutum HOM05D021816 ORTHO05D010786 7.9e-45 184.5 199 61.3
COL.COLO4_30908 Corchorus olitorius HOM05D021816 ORTHO05D010786 9.6e-43 177.6 207 54.6
Gorai.010G170400 Gossypium raimondii HOM05D021816 ORTHO05D010786 3.7e-42 175.6 202 60.9
Gohir.D06G146200 Gossypium hirsutum HOM05D021816 ORTHO05D010786 3.2e-38 162.5 162 65.4
Aa31LG6G2140 Aethionema arabicum HOM05D010419 ORTHO05D012558 6.5e-15 85.1 171 37.4
Carub.0007s2165 Capsella rubella HOM05D010419 ORTHO05D012558 1.9e-14 83.6 195 38.5
FAN16G2119 Fragaria x ananassa HOM05D014033 ORTHO05D010786 3.6e-13 79.3 187 37.4
Oeu064523.1 Olea europaea HOM05D011191 ORTHO05D010786 1.4e-12 77.4 188 39.4
Nitab4.5_0000406g0150 Nicotiana tabacum HOM05D011191 ORTHO05D010786 6.7e-12 75.1 174 35.6
Nitab4.5_0012106g0010 Nicotiana tabacum HOM05D011191 ORTHO05D010786 6.7e-12 75.1 174 35.1
FvH4_3g11660 Fragaria vesca HOM05D014033 ORTHO05D010786 8.8e-12 74.7 188 37.2
FAN21G1527 Fragaria x ananassa HOM05D014033 ORTHO05D010786 8.8e-12 74.7 186 36.6
Peaxi162Scf01419g00119 Petunia axillaris HOM05D011191 ORTHO05D010786 1.5e-11 73.9 187 31.6
PGSC0003DMG400014768 Solanum tuberosum HOM05D011191 ORTHO05D010786 2.6e-11 73.2 172 34.9
Sed0020965 Sechium edule HOM05D002702 ORTHO05D010786 4.4e-11 72.4 218 32.6
MSTRG.11791 Avicennia marina HOM05D011191 ORTHO05D010786 5.7e-11 72.0 195 36.4
Potri.001G082800 Populus trichocarpa HOM05D011191 ORTHO05D010786 7.4e-11 71.6 189 41.8
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 9.7e-11 71.2 174 31.0
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 1.7e-10 70.5 222 33.3
AL7G34580 Arabidopsis lyrata HOM05D010419 ORTHO05D012558 1.7e-10 70.5 193 37.3
BcaB03g11630 Brassica carinata HOM05D010419 ORTHO05D012558 1.7e-10 70.5 183 36.6
Sp7g18130 Schrenkiella parvula HOM05D010419 ORTHO05D012558 2.8e-10 69.7 190 36.8
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 3.7e-10 69.3 223 32.3
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 3.7e-10 69.3 225 30.7
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 3.7e-10 69.3 225 30.7
RcHm_v2.0_Chr5g0018721 Rosa chinensis HOM05D014033 ORTHO05D010786 3.7e-10 69.3 188 35.6
CANSAT35G1553 Cannabis sativa HOM05D014033 ORTHO05D010786 4.8e-10 68.9 168 34.5
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 4.8e-10 68.9 156 33.3
Migut.A00390 Erythranthe guttata HOM05D011191 ORTHO05D010786 6.3e-10 68.6 143 35.0
Cc08_g06710 Coffea canephora HOM05D011191 ORTHO05D010786 2.4e-09 66.6 104 46.2
Solyc08g068840.3 Solanum lycopersicum HOM05D011191 ORTHO05D010786 5.3e-09 65.5 165 33.9
Sopen08g022570 Solanum pennellii HOM05D011191 ORTHO05D010786 5.3e-09 65.5 165 33.3
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 5.3e-09 65.5 230 28.7
CARHR226350 Cardamine hirsuta HOM05D010419 ORTHO05D012558 9.1e-09 64.7 186 33.9
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.2e-08 64.3 209 31.6
SGA_v2.0_scaffold27G11628 Striga asiatica HOM05D011191 ORTHO05D010786 1.2e-08 64.3 186 33.3
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 1.2e-08 64.3 226 30.5
CDE02G4627 Ceratophyllum demersum HOM05D002702 ORTHO05D010786 2.0e-08 63.5 186 33.3
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 2.0e-08 63.5 214 28.5
CAN.G273.25 Capsicum annuum HOM05D011191 ORTHO05D010786 2.6e-08 63.2 191 32.5
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 3.5e-08 62.8 227 31.7
Rhsim07G0091200 Rhododendron simsii HOM05D011191 ORTHO05D010786 3.5e-08 62.8 160 32.5
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 4.5e-08 62.4 153 34.0
EL10Ac3g05292 Beta vulgaris HOM05D022334 ORTHO05D019466 7.7e-08 61.6 144 35.4
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.0e-07 61.2 240 30.0
Manes.17G005100 Manihot esculenta HOM05D011191 ORTHO05D010786 1.0e-07 61.2 115 40.0
BcaC01g00621 Brassica carinata HOM05D010419 ORTHO05D012558 1.3e-07 60.8 185 33.5
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 1.3e-07 60.8 228 28.1
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 1.7e-07 60.5 153 32.7
Hund20999 Selenicereus undatus HOM05D022334 ORTHO05D019466 1.7e-07 60.5 209 29.7
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 2.2e-07 60.1 214 33.2
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.2e-07 60.1 220 30.9
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 3.8e-07 59.3 238 29.8
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 3.8e-07 59.3 222 28.8
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 5.0e-07 58.9 209 28.2
vmacro10812 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 5.0e-07 58.9 194 32.0
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 6.5e-07 58.5 218 29.8
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 6.5e-07 58.5 216 26.9
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 8.5e-07 58.2 162 32.1
Haze_20120 Corylus avellana HOM05D002702 ORTHO05D003416 8.5e-07 58.2 175 33.7
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 8.5e-07 58.2 222 30.6
AUR62019394 Chenopodium quinoa HOM05D022334 ORTHO05D019466 1.1e-06 57.8 182 33.5
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 1.1e-06 57.8 168 30.4
THA.LOC104812896 Tarenaya hassleriana HOM05D010419 ORTHO05D012558 1.1e-06 57.8 200 32.0
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.5e-06 57.4 207 30.0
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 1.5e-06 57.4 134 34.3
Thhalv10026258m.g Eutrema salsugineum HOM05D010419 ORTHO05D012558 1.5e-06 57.4 176 34.7
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 1.5e-06 57.4 194 30.4
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.9e-06 57.0 242 31.0
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 3.2e-06 56.2 152 30.3
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 5.5e-06 55.5 206 28.6
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 5.5e-06 55.5 207 30.9
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 7.2e-06 55.1 211 28.4
Lalb_Chr02g0157421 Lupinus albus HOM05D002702 ORTHO05D003416 7.2e-06 55.1 116 38.8
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 7.2e-06 55.1 193 31.6
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 7.2e-06 55.1 199 32.2
A08p14400 Brassica napus HOM05D010419 ORTHO05D012558 9.4e-06 54.7 119 37.0
Psat5g080560 Pisum sativum HOM05D002702 ORTHO05D003416 9.4e-06 54.7 167 31.1


User provided reference genes

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