Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 0.0e+00 1387.9 724 100.0
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 0.0e+00 1135.9 724 82.5
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 0.0e+00 1117.8 724 80.9
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 0.0e+00 1114.0 724 80.8
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 0.0e+00 1113.6 724 80.8
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 0.0e+00 1095.5 724 79.7
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 6.7e-259 897.5 655 69.6
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 5.7e-258 894.4 655 69.3
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 1.7e-257 892.9 731 65.3
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 1.1e-256 890.2 746 63.1
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 8.5e-254 880.6 752 62.6
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.0e-251 873.6 657 68.2
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 3.7e-249 865.1 741 62.2
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.0e-246 857.1 732 62.0
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 5.0e-246 854.7 656 66.9
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 3.2e-245 852.0 761 62.0
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 5.5e-245 851.3 657 66.8
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 3.9e-243 845.1 718 63.1
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.1e-242 843.6 657 66.8
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 9.4e-237 823.9 724 60.1
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.6e-236 823.2 716 61.0
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 8.0e-236 820.8 726 60.3
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 3.0e-235 818.9 657 64.5
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 6.8e-235 817.8 656 64.3
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.2e-234 817.0 804 56.2
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.2e-234 817.0 771 57.2
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 2.6e-234 815.8 710 59.2
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.7e-233 813.1 747 60.4
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 1.8e-232 809.7 728 59.1
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 4.1e-232 808.5 725 59.6
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 1.6e-231 806.6 656 63.1
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.6e-231 806.6 715 59.4
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 2.0e-231 806.2 665 62.7
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 2.7e-231 805.8 728 58.9
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.7e-230 803.1 728 58.8
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.7e-230 803.1 724 57.9
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 1.9e-229 799.7 727 57.5
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 2.5e-229 799.3 690 60.4
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 3.2e-229 798.9 664 61.6
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.6e-228 796.6 711 59.6
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.6e-228 795.4 728 58.7
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 4.7e-228 795.0 725 61.7
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 2.3e-227 792.7 655 61.5
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.0e-227 792.3 723 58.1
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 2.0e-226 789.6 712 58.1
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.4e-226 788.9 728 57.8
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 4.4e-226 788.5 739 57.8
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 6.3e-225 784.6 656 62.2
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.1e-224 783.9 724 58.8
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 1.0e-222 777.3 727 57.2
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 2.5e-221 772.7 657 60.7
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 3.6e-220 768.8 658 60.5
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 3.6e-220 768.8 658 60.5
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 8.0e-220 767.7 656 60.7
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 1.2e-218 763.8 657 59.7
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 5.4e-216 755.0 728 55.6
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 9.2e-216 754.2 693 58.2
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.6e-215 753.4 690 57.8
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 2.7e-215 752.7 721 55.9
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 2.7e-215 752.7 713 55.1
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 4.5e-215 751.9 656 60.2
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 2.3e-214 749.6 680 58.7
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 1.1e-213 747.3 706 56.5
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.5e-213 746.9 685 57.4
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 1.9e-213 746.5 655 59.1
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 1.9e-213 746.5 695 57.6
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 1.9e-213 746.5 655 60.0
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 7.3e-213 744.6 642 60.9
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 8.0e-212 741.1 655 59.4
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.2e-210 737.3 1006 44.7
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.0e-210 736.5 696 56.3
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.6e-210 736.1 655 57.3
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.8e-210 734.9 717 54.3
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 1.3e-209 733.8 653 58.0
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 1.7e-209 733.4 738 54.2
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.1e-208 730.7 656 58.5
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 6.0e-207 724.9 655 58.9
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.0e-206 724.2 720 55.1
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 3.0e-206 722.6 655 58.8
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 5.0e-206 721.8 692 55.3
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.2e-204 717.2 662 56.8
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.1e-204 716.5 662 56.9
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 3.6e-204 715.7 638 57.8
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.5e-202 710.3 718 53.3
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 6.4e-201 704.9 557 64.8
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 8.3e-201 704.5 665 55.9
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 5.4e-200 701.8 685 55.9
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 7.1e-200 701.4 664 56.5
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 4.3e-197 692.2 671 54.5
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 9.9e-194 681.0 709 51.1
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.3e-193 680.6 626 57.2
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 6.4e-193 678.3 684 54.2
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.7e-183 646.4 692 51.3
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 3.8e-177 625.9 570 58.2
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.8e-172 609.8 655 52.5
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 7.9e-167 591.7 701 46.2
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.0e-166 589.7 606 52.1
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.6e-151 539.3 674 48.4
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 4.3e-149 532.7 481 57.4
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.4e-126 458.0 389 63.0
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 3.8e-121 439.9 657 41.6
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 6.1e-111 406.0 406 54.2
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 6.3e-108 396.0 274 73.4
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 7.0e-107 392.5 617 39.4
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.7e-105 387.9 602 39.4
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.4e-102 378.3 569 39.0
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.7e-92 344.7 609 38.3
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.4e-91 341.7 238 71.0
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 4.6e-90 336.7 341 54.0
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 2.7e-82 310.8 570 35.4
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.5e-82 310.5 656 34.8
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 4.5e-61 240.4 614 30.8
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.8e-52 210.7 185 54.6
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 4.8e-47 193.7 636 27.0
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 2.1e-42 178.3 656 28.8
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 2.7e-42 177.9 691 24.3
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 9.3e-35 152.9 138 58.7
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 9.3e-35 152.9 529 27.4
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.1e-34 151.8 211 42.7
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 7.4e-32 143.3 162 48.1
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.8e-25 122.1 146 50.0
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.1e-22 110.9 111 55.0
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.9e-19 102.1 94 57.4
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 3.9e-17 94.4 74 63.5
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 8.8e-17 93.2 530 21.7
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.1e-14 86.3 120 42.5
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.4e-14 85.9 189 32.3
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 5.0e-12 77.4 67 59.7
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 8.0e-10 70.1 66 50.0
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 4.0e-09 67.8 150 32.7
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-07 62.4 49 55.1


User provided reference genes

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