Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 2400.9 1369 100.0
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1939.9 1378 82.4
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1915.6 1382 82.3
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1832.0 1380 80.0
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1741.9 1396 77.4
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1730.7 1390 73.7
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1730.7 1385 74.0
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1721.4 1386 77.6
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1701.4 1410 75.7
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1590.1 1380 70.9
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1409.8 1413 62.8
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1382.9 1397 64.4
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1371.7 1448 62.2
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1367.4 1397 59.3
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1360.1 1329 65.1
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1349.3 1392 60.3
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1349.0 1412 64.2
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1334.3 1419 62.9
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1322.4 1405 61.1
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1314.7 1404 62.5
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1305.8 1409 62.2
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1301.6 1399 60.8
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1297.7 1407 62.8
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1291.9 1391 59.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1288.5 1403 60.7
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1252.3 1409 60.0
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1250.7 1420 60.1
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1250.3 1394 63.1
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1246.9 1410 59.9
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1246.1 1415 61.9
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1243.8 1418 61.5
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1233.0 1467 57.8
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1227.2 1441 60.5
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1221.1 1408 57.5
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1220.3 1436 60.9
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1218.4 1390 57.5
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1218.0 1390 58.3
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1217.2 1409 58.9
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1211.1 1410 57.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1202.6 1390 56.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1200.7 1405 58.4
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1198.3 1393 57.9
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1189.9 1390 56.1
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1187.9 1392 57.5
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1187.2 1527 55.2
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1184.9 1391 56.6
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1179.5 1400 57.4
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1166.8 1410 59.2
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1165.6 1393 55.3
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1159.1 1228 64.6
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1157.9 1408 55.7
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1149.8 1391 56.4
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1140.6 1403 54.8
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1138.6 1404 53.8
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1132.5 1379 54.7
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1131.7 1394 54.9
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 0.0e+00 1122.8 1241 63.0
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1121.7 1367 57.2
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1118.6 1399 56.4
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1117.8 1422 53.7
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 0.0e+00 1109.4 1258 56.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 0.0e+00 1088.6 1387 54.6
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 0.0e+00 1084.3 1419 54.1
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.4e-310 1069.3 1394 52.3
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.5e-307 1060.1 1419 55.9
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.3e-306 1057.0 1452 57.5
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.2e-304 1050.4 1410 52.5
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.2e-304 1050.4 1244 54.7
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 2.0e-304 1049.7 1410 52.8
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.4e-302 1043.5 1451 49.9
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 6.0e-301 1038.1 1404 50.7
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.5e-296 1023.5 1434 50.3
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 2.0e-296 1023.1 1427 50.5
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 6.4e-295 1018.1 1062 56.7
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 5.4e-294 1015.0 1407 51.0
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 6.0e-293 1011.5 1434 51.3
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 6.0e-293 1011.5 1443 50.3
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 1.6e-290 1003.4 1432 49.3
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 8.1e-290 1001.1 1446 49.9
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 5.3e-289 998.4 1407 49.8
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 6.7e-284 981.5 1268 51.1
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.7e-279 966.8 1383 49.3
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 7.9e-277 958.0 1434 46.4
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.3e-276 956.4 1190 51.2
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 6.3e-274 948.3 1195 52.0
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.5e-272 943.7 1411 48.1
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 1.7e-271 940.3 781 66.5
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.8e-271 939.1 1408 47.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.8e-271 939.1 1408 47.9
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 5.0e-271 938.7 1408 47.9
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 6.5e-271 938.3 1228 48.0
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 6.5e-271 938.3 1405 48.0
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 5.0e-263 912.1 1114 58.9
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.5e-262 909.8 1382 46.3
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 9.4e-262 907.9 953 55.9
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.1e-259 901.0 1255 49.2
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 3.7e-258 896.0 1517 46.3
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 4.8e-258 895.6 1500 47.0
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-256 891.0 1474 43.5
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 4.5e-256 889.0 936 55.2
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.2e-253 880.9 916 55.2
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.5e-246 857.4 1384 49.0
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.3e-242 844.3 1401 49.6
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 7.0e-233 812.0 1414 49.1
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 5.6e-230 802.4 1223 45.9
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 8.9e-228 795.0 1433 46.1
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.2e-226 790.4 1410 43.8
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-221 774.6 940 51.6
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.6e-221 774.2 1381 41.1
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.6e-221 773.1 1062 55.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.1e-217 761.5 1401 44.9
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.3e-215 753.8 916 50.5
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.4e-212 744.6 1386 45.0
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.1e-204 716.8 1128 46.6
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.1e-201 708.4 1045 45.4
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 2.6e-195 687.2 1408 42.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.0e-183 648.7 533 67.4
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 8.1e-181 639.0 1243 39.5
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.3e-177 625.5 800 49.0
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 3.1e-172 610.5 909 56.2
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 4.6e-168 596.7 1367 41.5
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-156 558.5 1268 41.1
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 5.3e-156 556.6 1263 38.6
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.4e-147 527.3 1326 37.7
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.2e-129 467.6 1416 34.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.2e-108 397.9 471 49.5
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 4.1e-108 397.5 1424 31.2
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.6e-105 387.1 324 63.9
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.0e-103 382.9 1445 31.6
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.9e-93 348.2 516 45.0
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.5e-89 335.1 1232 31.2
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.5e-86 325.9 1330 29.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.3e-81 308.1 392 47.4
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 9.3e-76 290.0 1329 34.7
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 1.3e-74 286.2 443 44.9
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.8e-63 249.2 966 29.7
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 2.4e-63 248.8 989 28.0
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 3.1e-63 248.4 963 28.1
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.0e-58 231.9 1147 28.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 5.1e-58 231.1 891 28.6
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 8.2e-56 223.8 532 35.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 2.0e-54 219.2 977 26.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.0e-53 216.9 213 56.3
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.7e-53 216.1 212 58.5
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 7.1e-52 210.7 716 29.5
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 3.0e-50 205.3 588 48.0
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.5e-49 203.0 855 27.1
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 3.7e-48 198.4 491 33.2
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 2.2e-45 189.1 359 35.7
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.9e-44 186.0 863 27.2
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.9e-44 186.0 882 27.3
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 1.2e-43 183.3 216 52.3
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 6.1e-43 181.0 179 52.0
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.3e-40 173.3 1098 25.2
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.6e-40 172.9 1091 26.1
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.6e-38 165.6 187 48.1
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.2e-36 158.7 667 27.1
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.2e-35 156.8 1036 25.3
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.1e-35 156.0 681 26.6
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 3.6e-35 155.2 1002 24.9
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.7e-32 145.2 381 39.1
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 3.7e-32 145.2 220 65.9
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.1e-31 142.1 124 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 5.3e-31 141.4 894 24.8
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.9e-26 125.2 202 42.6
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 5.7e-25 121.3 94 62.8
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 4.8e-24 118.2 147 46.9
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 4.2e-20 105.1 161 34.2
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 3.6e-19 102.1 835 24.0
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 4.7e-19 101.7 120 54.2
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.7e-16 93.2 81 58.0
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.1e-15 90.5 133 40.6
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 7.7e-14 84.3 88 51.1
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 2.2e-13 82.8 92 44.6
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.1e-11 74.7 125 36.0
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 4.8e-08 65.1 370 27.0
BolC4t25858H Brassica oleracea HOM05D001675 ORTHO05D001808 4.8e-08 65.1 106 41.5
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.6e-06 60.1 59 47.5
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 2.0e-06 59.7 76 48.7
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 2.0e-06 59.7 94 39.4


User provided reference genes

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