Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.6e-48 195.7 95 100.0
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 9.1e-47 189.9 95 95.8
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 2.6e-46 188.3 95 95.8
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 4.5e-46 187.6 95 93.7
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 7.7e-46 186.8 95 95.8
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 7.7e-46 186.8 95 95.8
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 7.7e-46 186.8 93 94.6
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 7.7e-46 186.8 95 93.7
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.0e-45 186.4 95 92.6
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.7e-45 185.7 92 95.7
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.7e-45 185.7 92 95.7
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.7e-45 185.7 95 94.7
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.2e-45 185.3 94 92.6
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.2e-45 185.3 94 92.6
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.2e-45 185.3 95 92.6
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 2.9e-45 184.9 95 94.7
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.9e-45 184.9 95 94.7
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.9e-45 184.9 95 92.6
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.8e-45 184.5 95 93.7
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.0e-45 184.1 93 93.5
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 5.0e-45 184.1 95 94.7
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 5.0e-45 184.1 95 92.6
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 6.5e-45 183.7 95 91.6
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.1e-44 183.0 95 93.7
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.1e-44 183.0 92 95.7
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 92.6
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 92.6
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.4e-44 182.6 94 92.6
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.9e-44 182.2 95 91.6
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 92.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 3.2e-44 181.4 95 91.6
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 3.2e-44 181.4 95 91.6
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 5.5e-44 180.6 95 91.6
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 89.5
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 9.4e-44 179.9 95 92.6
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 9.4e-44 179.9 95 92.6
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 1.2e-43 179.5 95 91.6
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.2e-43 179.5 95 91.6
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.1e-43 178.7 93 88.2
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 2.1e-43 178.7 95 89.5
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.6e-43 177.9 95 91.6
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 3.6e-43 177.9 92 92.4
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.6e-43 177.6 93 91.4
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 7.9e-43 176.8 92 91.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 1.4e-42 176.0 86 96.5
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.8e-42 175.6 95 90.5
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.8e-42 175.6 98 91.8
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.8e-42 175.6 95 90.5
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.3e-42 175.3 94 88.3
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 3.0e-42 174.9 95 86.3
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.0e-42 174.9 95 89.5
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 3.9e-42 174.5 96 88.5
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 5.1e-42 174.1 95 88.4
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 5.1e-42 174.1 95 90.5
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 5.1e-42 174.1 95 90.5
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 6.7e-42 173.7 95 87.4
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 8.8e-42 173.3 94 87.2
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 8.8e-42 173.3 92 89.1
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.1e-41 172.9 95 88.4
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-41 172.9 95 88.4
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 2.0e-41 172.2 95 87.4
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 3.3e-41 171.4 89 92.1
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 4.4e-41 171.0 95 86.3
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 4.4e-41 171.0 95 86.3
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 5.7e-41 170.6 123 73.2
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 88.4
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 9.7e-41 169.9 92 89.1
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 2.2e-40 168.7 92 88.0
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.8e-40 168.3 95 88.4
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.8e-40 168.3 95 88.4
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 4.8e-40 167.5 86 91.9
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.3e-40 167.2 119 72.3
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 8.2e-40 166.8 83 94.0
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.1e-39 166.4 94 85.1
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.4e-39 165.2 100 84.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 3.1e-39 164.9 103 80.6
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 3.1e-39 164.9 95 84.2
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.5e-38 162.5 92 88.0
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.5e-38 162.5 92 88.0
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 3.4e-38 161.4 94 81.9
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 7.7e-38 160.2 86 90.7
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.0e-37 159.8 94 80.9
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.0e-37 159.8 94 80.9
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.0e-37 159.8 95 77.9
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.0e-37 159.8 94 85.1
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 91.7
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 91.7
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 91.7
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 5.0e-37 157.5 95 78.9
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 8.5e-37 156.8 84 90.5
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 8.5e-37 156.8 95 81.1
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.1e-36 156.4 94 78.7
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.2e-35 152.9 96 77.1
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 2.1e-35 152.1 93 78.5
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.0e-34 149.8 94 76.6
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.4e-34 149.4 85 82.4
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 3.0e-34 148.3 86 77.9
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 8.8e-34 146.7 75 96.0
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 3.3e-33 144.8 75 96.0
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 2.8e-32 141.7 72 94.4
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 4.8e-32 141.0 79 91.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 1.1e-31 139.8 75 92.0
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.1e-31 139.8 78 84.6
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.4e-31 139.4 81 80.2
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.4e-31 138.7 208 43.8
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 3.5e-30 134.8 75 84.0
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.1e-28 129.8 96 70.8
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.5e-28 129.4 83 77.1
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.5e-28 128.6 75 84.0
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 5.5e-28 127.5 69 89.9
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 5.5e-28 127.5 71 83.1
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.3e-26 122.1 95 67.4
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 3.0e-26 121.7 67 82.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 8.8e-26 120.2 75 80.0
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.2e-25 119.8 95 68.4
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.2e-25 119.8 95 68.4
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 1.5e-25 119.4 75 76.0
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 5.7e-25 117.5 73 75.3
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.9e-20 102.4 83 56.6
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 5.5e-20 100.9 85 54.1
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.6e-19 99.4 92 58.7
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.8e-18 95.9 54 87.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 8.8e-18 93.6 45 93.3
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.6e-17 92.0 58 75.9
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.7e-16 89.4 56 75.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 4.5e-14 81.3 85 48.2
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 4.5e-14 81.3 43 88.4
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.7e-13 79.3 79 58.2
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.1e-07 60.1 35 77.1
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.4e-07 59.7 99 40.4
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 7.0e-07 57.4 99 39.4
CAN.G1080.4 Capsicum annuum HOM05D000052 ORTHO05D000963 4.5e-06 54.7 68 48.5


User provided reference genes

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