Gene: Solyc12g049310.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g049310.2
  • Transcript Identifier Solyc12g049310.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 60469358-60475828 : positive

Gene Family Information

  • ID HOM05D006077
  • #Genes/#Species 130/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g049310.2.1
  • uniprot A0A3Q7JAF4
  • gene_id Solyc12g049310

Descriptions

  • Description Ubiquitin-like protein ATG12 (AHRD V3.3 *** A0A2G3B3P3_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000045
IBA
IEA
GOA Databaseautophagosome assembly
GO:0000045
IEA
InterProautophagosome assembly
GO:0006914
IEA
GOA Databaseautophagy
GO:0044804
IBA
GOA Databaseautophagy of nucleus
GO:0006501
IBA
GOA DatabaseC-terminal protein lipidation
GO:0000422
IBA
GOA Databaseautophagy of mitochondrion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G13970

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0034274
IBA
GOA DatabaseAtg12-Atg5-Atg16 complex
GO:0034045
IBA
GOA Databasephagophore assembly site membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029071 Ubiquitin-like domain superfamily
IPR007242 Ubiquitin-like protein Atg12
Mapman id Description
19.3.3.3.1 Protein homeostasis.autophagy.phagophore expansion.ATG12-ATG5-ATG16 conjugation system.ubiquitin-fold protein (ATG12)