Gene: AT3G13970

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13970
  • Transcript Identifier AT3G13970.2
  • Gene Type Coding gene
  • Location Chr3 : 4614014-4614794 : negative

Gene Family Information

  • ID HOM05D006077
  • #Genes/#Species 130/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13970.2
  • symbol APG12B
  • Alias APG12,AUTOPHAGY 12,ATG12B,AUTOPHAGY 12B
  • full_name AUTOPHAGY 12 B
  • uniprot Q9LVK3

Descriptions

  • Description Ubiquitin-like superfamily protein
  • Computational description AUTOPHAGY 12 B (APG12B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 12 (InterPro:IPR007242); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G54210.1); Has 304 Blast hits to 304 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000045
IBA
IEA
Gene Ontologyautophagosome assembly1
GO:0000045
IEA
InterProautophagosome assembly
GO:0006914
IEA
GOA Databaseautophagy
GO:0006914
IGI
Gene Ontologyautophagy2
GO:0044804
IBA
Gene Ontologyautophagy of nucleus1
GO:0006501
IBA
Gene OntologyC-terminal protein lipidation1
GO:0000422
IBA
Gene Ontologyautophagy of mitochondrion1
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
GOA Databaseprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
Gene Ontologycytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0009507
ISM
Gene Ontologychloroplast
GO:0034274
IBA
Gene OntologyAtg12-Atg5-Atg16 complex1
GO:0034045
IBA
Gene Ontologyphagophore assembly site membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007242 Ubiquitin-like protein Atg12
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
19.3.3.3.1 Protein homeostasis.autophagy.phagophore expansion.ATG12-ATG5-ATG16 conjugation system.ubiquitin-fold protein (ATG12)