Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.6e-55 219.2 106 100.0
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 6.6e-30 134.0 77 88.3
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 7.3e-29 130.6 77 85.7
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.6e-28 129.4 77 83.1
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 2.3e-27 125.6 77 77.9
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 5.2e-27 124.4 77 83.1
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 5.2e-27 124.4 77 83.1
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.6e-26 122.1 76 75.0
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 5.8e-26 120.9 76 73.7
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 5.8e-26 120.9 77 77.9
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 5.8e-26 120.9 76 72.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 9.8e-26 120.2 77 81.8
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.7e-25 119.4 82 74.4
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.2e-25 119.0 77 74.0
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 2.9e-25 118.6 77 74.0
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.9e-25 118.6 77 72.7
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 3.7e-25 118.2 77 71.4
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.7e-25 118.2 77 71.4
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.7e-25 118.2 77 75.3
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 4.9e-25 117.9 77 75.3
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.9e-25 117.9 77 76.6
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 4.9e-25 117.9 77 75.3
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 6.4e-25 117.5 77 75.3
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 8.3e-25 117.1 77 75.3
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 8.3e-25 117.1 77 75.3
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 8.3e-25 117.1 77 71.4
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.1e-24 116.7 77 74.0
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.1e-24 116.7 77 74.0
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.4e-24 116.3 77 70.1
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.4e-24 116.3 77 70.1
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.4e-24 116.3 76 77.6
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.9e-24 115.9 77 72.7
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.9e-24 115.9 77 74.0
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.4e-24 115.5 77 74.0
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.4e-24 115.5 77 74.0
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 3.2e-24 115.2 77 70.1
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 3.2e-24 115.2 77 70.1
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 5.4e-24 114.4 77 71.4
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 5.4e-24 114.4 82 69.5
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 5.4e-24 114.4 77 70.1
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 7.0e-24 114.0 77 74.0
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 7.0e-24 114.0 82 68.3
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 7.0e-24 114.0 77 70.1
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 7.0e-24 114.0 77 72.7
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 7.0e-24 114.0 77 71.4
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 9.2e-24 113.6 77 68.8
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 9.2e-24 113.6 82 68.3
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 9.2e-24 113.6 77 64.9
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 9.2e-24 113.6 82 69.5
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.2e-23 113.2 82 68.3
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 1.2e-23 113.2 82 68.3
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.2e-23 113.2 77 70.1
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 1.2e-23 113.2 77 70.1
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 1.2e-23 113.2 77 72.7
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.6e-23 112.8 77 71.4
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.6e-23 112.8 82 67.1
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 1.6e-23 112.8 82 67.1
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.6e-23 112.8 82 67.1
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 2.0e-23 112.5 82 68.3
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.0e-23 112.5 77 68.8
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 2.7e-23 112.1 82 67.1
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 2.7e-23 112.1 82 67.1
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 2.7e-23 112.1 77 68.8
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.7e-23 112.1 77 67.5
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 2.7e-23 112.1 77 68.8
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 4.6e-23 111.3 77 71.4
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 6.0e-23 110.9 77 67.5
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 6.0e-23 110.9 77 68.8
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 7.8e-23 110.5 77 67.5
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.3e-22 109.8 77 68.8
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.7e-22 109.4 77 68.8
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.7e-22 109.4 77 67.5
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.0e-22 108.6 77 71.4
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 3.0e-22 108.6 77 66.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 3.0e-22 108.6 77 68.8
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 3.0e-22 108.6 77 66.2
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 3.0e-22 108.6 77 68.8
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 3.0e-22 108.6 77 68.8
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 5.0e-22 107.8 77 66.2
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 5.0e-22 107.8 77 66.2
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 5.0e-22 107.8 77 66.2
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 6.6e-22 107.5 77 67.5
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 8.6e-22 107.1 78 69.2
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.1e-21 106.7 77 64.9
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.5e-21 106.3 77 66.2
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 1.5e-21 106.3 77 66.2
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.9e-21 105.9 75 65.3
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 1.9e-21 105.9 80 62.5
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 3.3e-21 105.1 77 66.2
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 4.3e-21 104.8 75 65.3
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 4.3e-21 104.8 77 63.6
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 5.6e-21 104.4 82 59.8
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 5.6e-21 104.4 77 61.0
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 7.3e-21 104.0 77 62.3
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 7.3e-21 104.0 97 55.7
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 9.5e-21 103.6 77 64.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.2e-20 103.2 77 64.9
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.6e-20 102.8 72 66.7
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.6e-20 102.8 77 66.2
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.1e-20 102.4 77 64.9
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.1e-20 102.4 77 64.9
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.1e-20 102.4 77 62.3
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 2.8e-20 102.1 77 64.9
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 6.2e-20 100.9 77 64.9
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 6.2e-20 100.9 77 63.6
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 6.2e-20 100.9 77 63.6
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.1e-19 100.1 77 62.3
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.1e-19 100.1 77 58.4
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.4e-19 99.8 77 63.6
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.4e-19 99.8 75 61.3
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.8e-19 99.4 77 62.3
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 6.8e-19 97.4 77 64.9
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 2.2e-17 92.4 77 57.1
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.4e-16 89.7 72 58.3
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 5.4e-16 87.8 73 54.8
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.0e-14 83.6 75 53.3
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.3e-14 83.2 75 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.7e-14 82.8 75 52.0
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.6e-14 80.5 78 56.4
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 3.6e-12 75.1 74 48.6
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.1e-11 73.6 75 53.3
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 3.8e-09 65.1 75 44.0


User provided reference genes

Program Settings