Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G018800 Theobroma cacao HOM05D003404 ORTHO05D004052 7.8e-65 250.4 131 100.0
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 2.2e-59 232.3 128 94.5
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 8.3e-59 230.3 128 93.8
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 8.3e-59 230.3 128 93.0
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 1.4e-58 229.6 128 93.8
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 1.9e-58 229.2 128 93.0
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 1.9e-58 229.2 128 93.0
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.4e-58 228.8 128 92.2
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 3.2e-58 228.4 128 91.4
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 3.2e-58 228.4 128 91.4
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 3.2e-58 228.4 128 92.2
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 4.1e-58 228.0 128 92.2
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 4.1e-58 228.0 128 90.6
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 4.1e-58 228.0 128 92.2
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 5.4e-58 227.6 128 92.2
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 5.4e-58 227.6 128 92.2
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 5.4e-58 227.6 128 92.2
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 5.4e-58 227.6 128 92.2
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 7.1e-58 227.3 128 91.4
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 7.1e-58 227.3 128 91.4
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 9.2e-58 226.9 128 89.8
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 9.2e-58 226.9 128 90.6
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 2.1e-57 225.7 128 91.4
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 2.1e-57 225.7 128 91.4
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 2.1e-57 225.7 128 89.1
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 2.1e-57 225.7 128 89.1
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 2.1e-57 225.7 128 89.1
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 2.1e-57 225.7 128 89.1
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 3.5e-57 224.9 128 90.6
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 4.6e-57 224.6 128 90.6
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 4.6e-57 224.6 128 89.1
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 4.6e-57 224.6 128 90.6
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 6.0e-57 224.2 128 91.4
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 7.8e-57 223.8 128 89.8
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 1.0e-56 223.4 128 89.8
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 1.3e-56 223.0 128 88.3
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.3e-56 223.0 128 89.8
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 1.7e-56 222.6 128 89.8
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 1.7e-56 222.6 128 89.8
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 1.7e-56 222.6 127 88.2
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 3.0e-56 221.9 128 88.3
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 3.0e-56 221.9 128 88.3
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 3.0e-56 221.9 128 89.8
Cpa.g.sc173.13 Carica papaya HOM05D003404 ORTHO05D004052 3.9e-56 221.5 128 89.8
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 3.9e-56 221.5 128 89.8
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 3.9e-56 221.5 128 89.8
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 6.6e-56 220.7 128 90.6
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.5e-55 219.5 128 88.3
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 1.5e-55 219.5 127 85.8
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 3.3e-55 218.4 128 87.5
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 3.3e-55 218.4 127 89.0
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 4.3e-55 218.0 128 89.1
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 9.5e-55 216.9 128 85.9
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.2e-54 216.5 127 88.2
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 1.2e-54 216.5 127 89.0
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.6e-54 216.1 127 87.4
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.6e-54 216.1 127 87.4
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 2.1e-54 215.7 128 85.9
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 2.1e-54 215.7 127 87.4
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 2.8e-54 215.3 127 84.3
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 3.6e-54 214.9 125 88.0
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 4.7e-54 214.5 128 85.9
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 4.7e-54 214.5 128 83.6
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 8.1e-54 213.8 127 86.6
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 1.1e-53 213.4 127 85.0
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 1.1e-53 213.4 127 86.6
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 1.1e-53 213.4 128 85.2
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.4e-53 213.0 128 85.2
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 1.8e-53 212.6 127 83.5
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 2.3e-53 212.2 127 83.5
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 2.3e-53 212.2 128 84.4
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 2.3e-53 212.2 128 84.4
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 3.1e-53 211.8 128 83.6
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 3.1e-53 211.8 128 82.0
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 3.1e-53 211.8 127 85.0
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 5.2e-53 211.1 128 82.8
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 5.2e-53 211.1 128 83.6
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 5.2e-53 211.1 128 83.6
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 8.9e-53 210.3 128 82.8
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 1.2e-52 209.9 128 82.8
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 1.2e-52 209.9 127 83.5
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 1.5e-52 209.5 128 83.6
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.5e-52 209.5 128 81.2
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.5e-52 209.5 127 84.3
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.5e-52 209.5 127 83.5
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 2.0e-52 209.1 128 83.6
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 3.4e-52 208.4 128 82.8
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.4e-52 208.0 127 84.3
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 7.6e-52 207.2 128 82.8
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 9.9e-52 206.8 127 84.3
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 9.9e-52 206.8 127 82.7
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 1.3e-51 206.5 128 81.2
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 1.7e-51 206.1 128 82.8
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 2.9e-51 205.3 128 82.8
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 3.7e-51 204.9 127 82.7
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 6.4e-51 204.1 127 84.3
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 1.4e-50 203.0 127 82.7
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 1.9e-50 202.6 127 82.7
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 1.9e-50 202.6 127 82.7
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 3.2e-50 201.8 154 72.1
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 1.0e-48 196.8 127 76.4
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 2.8e-46 188.7 127 76.4
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.8e-45 186.0 127 74.8
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 3.1e-45 185.3 127 74.8
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 4.9e-43 177.9 127 69.3
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 8.4e-43 177.2 127 73.2
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 5.4e-42 174.5 127 71.7
arahy.Tifrunner.gnm1.ann1.GG9Z8N Arachis hypogaea HOM05D003404 ORTHO05D004052 1.4e-37 159.8 183 55.2
Actinidia01636 Actinidia chinensis HOM05D003404 ORTHO05D004052 9.0e-37 157.1 96 89.6
Sabra01G0174400 Salix brachista HOM05D003404 ORTHO05D004052 2.2e-35 152.5 80 91.2
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 1.7e-32 142.9 127 59.1
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 5.1e-32 141.4 80 83.8
Lsat_1_v5_gn_7_61421 Lactuca sativa HOM05D003404 ORTHO05D004052 5.3e-29 131.3 117 59.8
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 9.0e-29 130.6 114 52.6
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 7.6e-28 127.5 89 77.5
arahy.Tifrunner.gnm1.ann1.I4H71T Arachis hypogaea HOM05D003404 ORTHO05D004052 1.3e-27 126.7 88 79.5
Lsat_1_v5_gn_8_147900 Lactuca sativa HOM05D003404 ORTHO05D004052 1.7e-27 126.3 80 76.2
HPP92_028449 Vanilla planifolia HOM05D003404 ORTHO05D004052 2.9e-27 125.6 112 61.6
Lsat_1_v5_gn_2_40780 Lactuca sativa HOM05D003404 ORTHO05D004052 4.9e-27 124.8 79 74.7
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 1.1e-26 123.6 108 55.6
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 1.4e-21 106.7 135 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1502 Anthoceros agrestis HOM05D003404 ORTHO05D016498 5.3e-21 104.8 94 59.6
HPP92_010313 Vanilla planifolia HOM05D003404 ORTHO05D020285 8.4e-19 97.4 123 52.0
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 6.0e-17 91.3 101 53.5
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 8.2e-14 80.9 49 89.8
HPP92_027407 Vanilla planifolia HOM05D003404 ORTHO05D036552 2.0e-12 76.3 42 81.0
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 3.8e-11 72.0 78 52.6
Lsat_1_v5_gn_5_32960 Lactuca sativa HOM05D003404 ORTHO05D020285 6.5e-11 71.2 79 54.4
QL09p011372 Quercus lobata HOM05D003404 ORTHO05D004052 2.5e-10 69.3 39 79.5
HPP92_027749 Vanilla planifolia HOM05D028814 ORTHO05D020285 3.5e-09 65.5 77 50.6
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 4.6e-09 65.1 96 38.5


User provided reference genes

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