Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1907.5 955 100.0
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 0.0e+00 1598.9 953 85.2
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1567.0 962 82.2
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 0.0e+00 1536.2 951 81.8
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 0.0e+00 1530.8 941 82.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 0.0e+00 1297.3 811 82.4
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1273.5 950 68.6
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1211.4 962 63.8
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1198.3 952 64.0
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1191.0 951 64.2
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1190.3 955 64.7
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1185.6 949 63.3
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1178.7 950 63.4
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1176.8 936 65.3
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1166.8 958 63.7
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1155.2 954 63.3
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1155.2 949 63.2
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1146.3 951 62.3
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1140.2 951 62.5
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1136.3 970 60.2
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1123.2 957 62.1
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1122.8 961 61.2
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1114.0 950 60.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1091.6 976 58.3
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1087.4 994 57.1
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1087.4 976 58.0
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 0.0e+00 1075.8 953 58.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 0.0e+00 1075.5 964 59.0
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.3e-311 1072.8 953 57.7
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 5.9e-311 1070.8 952 57.8
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 9.6e-306 1053.5 956 57.0
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 1.6e-305 1052.7 951 56.8
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.0e-299 1033.5 942 57.1
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.0e-299 1031.9 1041 53.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 5.1e-299 1031.2 956 56.9
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 6.7e-299 1030.8 961 56.8
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 4.3e-298 1028.1 950 57.2
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 5.7e-298 1027.7 967 56.8
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 1.6e-297 1026.2 951 56.5
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 2.8e-297 1025.4 954 57.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 8.2e-297 1023.8 966 55.9
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.1e-296 1023.5 953 56.2
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.8e-296 1022.7 960 57.2
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.0e-295 1019.2 951 56.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.6e-295 1018.8 955 56.3
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.7e-294 1016.1 951 55.9
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 5.0e-294 1014.6 943 57.9
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 6.5e-294 1014.2 944 56.1
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.1e-293 1013.4 954 56.0
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.9e-293 1012.7 955 57.2
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.6e-292 1009.6 941 56.3
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.4e-288 996.5 942 57.3
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 6.9e-288 994.2 951 55.8
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.5e-285 985.7 957 55.0
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.1e-282 976.9 944 55.5
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.3e-281 973.4 976 54.0
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 3.7e-281 971.8 954 55.1
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 3.7e-281 971.8 950 54.8
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 5.3e-280 968.0 974 53.5
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 9.1e-280 967.2 959 53.9
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 5.5e-277 958.0 951 55.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 6.1e-276 954.5 956 54.0
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 8.0e-276 954.1 955 54.2
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 9.1e-272 940.6 953 53.0
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.1e-269 933.7 801 61.8
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 9.4e-269 930.6 948 52.8
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.6e-268 929.9 959 53.3
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.7e-265 919.8 949 53.0
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.8e-264 916.4 974 50.9
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.1e-261 907.1 937 53.6
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.4e-259 900.2 964 51.0
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 3.4e-258 895.6 958 51.4
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.1e-256 890.6 967 50.4
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 3.1e-256 889.0 984 50.4
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.3e-254 883.6 994 48.9
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.0e-251 874.0 983 49.4
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.8e-251 873.2 971 50.3
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.7e-249 866.7 940 51.4
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 8.3e-249 864.4 877 54.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 5.9e-247 858.2 945 49.3
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.4e-242 842.4 868 52.4
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 1.3e-241 840.5 830 54.3
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.9e-237 826.6 959 47.9
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 8.1e-236 821.2 810 56.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 4.1e-232 808.9 939 48.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 2.7e-231 806.2 974 47.5
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.0e-230 804.3 949 48.2
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 5.1e-230 802.0 724 58.0
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 6.6e-230 801.6 975 47.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 6.6e-230 801.6 978 46.6
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.5e-229 800.4 953 47.3
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.5e-229 800.4 968 47.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 5.6e-229 798.5 980 47.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 2.8e-228 796.2 916 47.9
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 1.4e-224 783.9 914 47.8
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 3.2e-216 756.1 1038 44.1
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 9.0e-211 738.0 863 49.8
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 3.4e-210 736.1 726 53.7
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.5e-210 735.7 931 46.0
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.9e-210 734.6 574 66.7
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.3e-209 734.2 574 66.6
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.9e-198 696.0 643 57.5
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.4e-186 656.4 910 44.5
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.3e-182 643.7 665 51.1
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.2e-178 631.3 819 44.7
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.2e-176 622.9 776 47.0
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 5.5e-176 622.5 861 42.4
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 5.1e-174 615.9 664 51.5
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-172 611.3 664 51.2
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 5.0e-169 599.4 780 44.4
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.7e-159 566.2 655 46.6
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 6.7e-158 562.4 661 46.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-152 544.3 723 43.8
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 5.5e-152 542.7 725 44.7
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.3e-148 531.6 1036 35.5
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.2e-146 525.0 950 36.9
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 1.7e-145 521.2 482 58.1
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-139 501.5 599 47.1
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.1e-131 473.4 534 48.5
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 4.4e-125 453.4 846 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 9.8e-125 452.2 828 36.2
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 5.4e-123 446.4 959 32.2
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 8.1e-111 406.0 358 57.3
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 9.2e-107 392.5 594 40.2
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.0e-105 389.0 597 40.7
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 5.6e-104 383.3 261 71.3
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 9.6e-104 382.5 263 71.5
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.8e-103 380.9 564 41.3
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.4e-99 367.9 557 43.3
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 4.5e-85 320.5 349 50.4
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-81 309.3 341 48.4
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.8e-79 301.2 405 46.4
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.1e-72 279.3 1156 25.0
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-64 252.7 220 55.0
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 2.6e-61 241.5 199 58.8
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 5.0e-60 237.3 273 44.7
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 2.6e-56 224.9 230 52.2
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 6.3e-55 220.3 157 69.4
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 2.9e-52 211.5 273 43.2
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 5.7e-48 197.2 430 34.7
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-45 188.7 142 65.5
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 3.8e-44 184.5 308 37.7
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 1.9e-43 182.2 152 61.2
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 6.1e-34 150.6 209 43.5
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.2e-29 136.3 142 52.1
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.2e-27 127.9 97 62.9
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.8e-26 125.2 143 51.7
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.6e-26 124.8 81 71.6
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 6.1e-26 124.0 121 54.5
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.3e-25 122.1 92 65.2
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 6.3e-23 114.0 140 43.6
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.0e-21 109.0 225 32.9
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 3.3e-19 101.7 154 40.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 6.1e-18 97.4 154 39.6
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.5e-16 92.8 281 27.0
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 4.4e-16 91.3 102 49.0
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 5.8e-16 90.9 105 46.7
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 9.8e-16 90.1 77 59.7
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-14 86.7 145 37.9
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 7.0e-14 84.0 115 42.6
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-13 82.8 87 50.6
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 3.5e-13 81.6 64 64.1
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 7.8e-13 80.5 87 49.4
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 7.8e-13 80.5 87 49.4
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 7.8e-13 80.5 87 49.4
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.0e-12 80.1 226 29.2
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 8.0e-10 70.5 81 48.1
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 2.6e-08 65.5 85 43.5
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 2.6e-08 65.5 85 43.5
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 4.4e-08 64.7 103 37.9
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 7.5e-08 63.9 175 29.1


User provided reference genes

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