Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1858.2 977 100.0
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1564.3 977 86.3
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1557.0 979 85.6
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1549.3 978 85.2
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1395.6 908 83.6
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1360.9 822 88.3
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1352.4 977 74.1
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1347.0 988 73.5
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1339.3 1000 73.9
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1314.7 998 72.1
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1312.7 994 70.7
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1305.0 991 71.3
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1303.9 996 70.6
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1300.4 1002 70.8
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1297.7 995 70.8
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1295.0 993 70.9
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1294.6 982 71.8
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1294.6 982 71.8
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1294.3 1069 67.9
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1290.0 1001 71.4
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1288.5 1003 70.3
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1283.9 1055 67.8
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1282.7 995 69.8
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1282.3 1047 68.8
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1280.0 1049 68.0
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1277.3 985 70.8
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1273.1 985 70.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1273.1 985 70.1
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1273.1 985 70.1
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1272.7 985 69.8
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1271.9 1047 68.1
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1271.9 991 69.0
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1271.5 998 68.9
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1271.1 985 69.7
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 984 71.6
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1268.1 985 69.7
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1266.5 982 69.6
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1265.8 993 70.2
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1261.9 1039 67.3
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1261.9 982 69.7
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 982 69.7
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1259.2 1035 67.1
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1257.7 1032 67.6
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1256.1 983 69.2
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1255.4 987 68.5
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1254.2 1039 67.0
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 983 68.5
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1248.8 982 69.2
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 983 69.6
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1246.5 1002 68.0
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 988 69.1
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1244.6 1028 66.6
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1238.0 986 68.4
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1232.6 998 67.9
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1230.7 980 69.1
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1226.8 994 67.7
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1226.8 986 68.1
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 986 67.8
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1223.0 986 68.1
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1220.3 979 67.4
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 986 67.8
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 1005 67.1
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 1168 59.2
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 993 68.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1207.6 987 68.0
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1205.3 986 67.5
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1204.9 979 67.5
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1204.9 1022 65.5
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1204.5 1038 64.1
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1200.7 988 66.4
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1199.5 976 65.7
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1198.3 976 65.6
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1197.2 996 66.2
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1192.9 1011 64.5
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1182.5 1047 63.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 993 65.8
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1174.8 998 65.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1172.9 1011 64.5
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1166.8 982 65.0
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1135.9 834 73.0
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1113.2 890 69.3
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1107.0 981 62.6
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1104.7 982 62.3
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1080.9 996 58.8
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1077.8 853 69.4
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1076.6 1011 59.4
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.1e-308 1062.4 1001 58.6
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 1.8e-307 1059.3 1000 59.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 2.3e-286 989.2 986 58.4
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.1e-277 960.3 981 57.4
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 7.4e-269 931.0 998 56.3
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.3e-267 924.9 1009 53.5
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.3e-262 910.2 1065 49.5
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 2.4e-259 899.4 1061 49.8
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.4e-251 873.6 998 51.1
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 5.5e-240 835.1 763 62.5
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 2.9e-225 786.2 607 70.7
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.0e-213 746.9 809 55.5
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.7e-207 725.7 607 66.7
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 8.0e-207 724.9 714 57.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 7.0e-203 711.8 549 70.5
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 3.4e-189 666.4 947 45.7
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 6.9e-174 615.5 652 57.5
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.2e-170 604.7 558 61.5
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.4e-150 537.3 982 35.2
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.5e-133 481.5 388 66.8
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.2e-130 471.9 358 65.4
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 6.3e-127 459.5 285 83.5
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.5e-123 446.4 305 72.1
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.2e-122 445.3 277 83.0
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-120 438.3 270 82.6
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 5.9e-117 426.4 1004 32.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 5.4e-110 403.3 288 73.3
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 4.7e-106 390.2 364 58.2
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 2.7e-101 374.4 1280 28.3
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.9e-100 370.9 358 57.0
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 9.5e-99 365.9 933 31.4
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.0e-84 319.3 183 87.4
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.3e-84 318.9 346 49.4
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.9e-84 317.4 293 59.4
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.2e-70 269.6 252 57.5
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-68 265.8 199 66.3
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 6.6e-68 263.5 145 91.7
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 3.6e-66 257.7 223 65.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 1.3e-63 249.2 234 62.8
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 4.0e-57 227.6 149 77.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-56 225.3 144 75.0
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.1e-53 215.3 200 59.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.1e-50 203.4 129 75.2
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 4.0e-49 201.1 182 63.2
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 3.4e-48 198.0 214 56.5
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 4.5e-48 197.6 105 92.4
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.8e-47 194.5 129 72.1
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 5.6e-43 180.6 98 90.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.3e-42 179.5 166 62.0
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-42 179.1 131 69.5
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 1.5e-40 172.6 123 74.0
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-33 149.8 109 67.9
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.9e-30 139.0 85 76.5
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 4.5e-24 117.9 139 52.5
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 3.8e-23 114.8 85 67.1
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 3.8e-23 114.8 202 43.6
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.0e-20 105.1 165 40.0
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 1.4e-14 86.3 42 95.2
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 1.9e-06 59.3 63 50.8


User provided reference genes

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