Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 1.1e-281 972.6 477 100.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 6.8e-244 847.0 477 87.8
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.8e-236 822.4 481 84.0
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 1.9e-225 785.8 475 80.8
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.9e-223 778.1 478 80.5
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.1e-206 723.4 481 74.4
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.3e-202 709.9 480 72.5
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 5.0e-202 708.0 477 73.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.9e-201 706.1 474 73.4
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 6.1e-200 701.0 475 73.3
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 2.2e-197 692.6 490 70.4
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 1.4e-196 689.9 478 71.8
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 1.5e-195 686.4 477 71.5
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 2.0e-195 686.0 480 70.4
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.2e-193 678.7 480 69.4
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.2e-192 676.8 478 71.1
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.2e-192 676.8 470 70.4
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 2.7e-192 675.6 495 67.5
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 6.1e-192 674.5 488 68.2
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 7.9e-192 674.1 477 70.6
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 8.8e-191 670.6 482 70.1
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.5e-190 669.8 481 70.7
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.4e-188 662.5 480 68.1
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 1.2e-187 660.2 480 67.5
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.6e-187 659.1 481 69.0
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 5.0e-186 654.8 485 66.0
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 6.5e-186 654.4 477 67.1
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 1.2e-184 650.2 477 66.7
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 1.6e-184 649.8 480 64.0
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 2.1e-184 649.4 485 64.1
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.4e-183 646.7 474 67.1
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.3e-183 646.0 477 66.5
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 3.0e-183 645.6 483 66.0
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 4.0e-183 645.2 480 67.1
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 5.2e-183 644.8 480 66.9
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 5.2e-183 644.8 477 66.2
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 6.7e-183 644.4 478 66.9
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 8.8e-183 644.0 483 63.8
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 8.8e-183 644.0 483 63.6
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.5e-182 643.3 485 64.1
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 2.0e-182 642.9 477 65.6
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.6e-182 642.5 479 65.6
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 3.3e-182 642.1 474 66.7
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 3.3e-182 642.1 478 66.9
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 5.7e-182 641.3 486 65.6
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 7.5e-182 641.0 483 62.9
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 2.8e-181 639.0 483 63.4
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 3.7e-181 638.6 477 67.3
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 4.1e-180 635.2 477 65.4
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 7.0e-180 634.4 481 63.6
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 7.0e-180 634.4 374 81.8
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 2.0e-179 632.9 474 65.8
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 2.7e-179 632.5 476 64.9
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 2.7e-179 632.5 484 65.7
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 3.5e-179 632.1 479 66.0
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 7.7e-179 630.9 479 65.1
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.0e-178 630.6 483 62.7
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 2.2e-178 629.4 481 65.9
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 2.9e-178 629.0 474 66.0
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 5.0e-178 628.2 487 63.4
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.1e-177 627.1 485 62.3
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 1.1e-177 627.1 474 65.8
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.5e-177 626.7 485 62.3
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 1.5e-177 626.7 491 61.9
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 4.2e-177 625.2 485 66.0
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 4.2e-177 625.2 483 66.0
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.2e-176 623.6 476 64.3
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 2.7e-176 622.5 481 65.1
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 3.6e-176 622.1 450 66.7
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 3.6e-176 622.1 479 66.0
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.4e-175 620.2 477 63.5
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.3e-173 613.6 477 62.7
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 1.8e-172 609.8 477 63.7
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 1.1e-169 600.5 497 62.4
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 6.8e-167 591.3 477 63.3
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 2.4e-164 582.8 477 62.1
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 4.1e-164 582.0 467 60.6
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 6.8e-159 564.7 477 60.0
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 1.2e-158 563.9 497 59.0
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 2.0e-158 563.1 482 59.3
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 2.2e-157 559.7 440 63.0
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.9e-146 522.3 465 56.6
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 4.7e-144 515.4 385 63.9
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 5.2e-143 511.9 382 67.5
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 5.6e-137 491.9 472 52.3
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.2e-134 484.2 319 72.4
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 8.4e-133 478.0 338 67.5
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.7e-130 470.3 316 70.9
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 2.4e-127 459.9 424 53.5
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 4.8e-120 435.6 488 46.3
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 3.4e-110 402.9 433 48.3
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.1e-106 389.0 274 69.7
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 1.9e-105 387.1 269 69.5
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 6.7e-98 362.1 402 46.3
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 4.3e-97 359.4 255 67.8
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 3.4e-94 349.7 262 66.0
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 1.7e-93 347.4 406 44.8
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 5.0e-93 345.9 357 51.0
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 6.5e-93 345.5 441 42.2
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.3e-90 337.8 299 57.5
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 4.3e-89 332.8 239 66.5
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 9.1e-87 325.1 398 42.5
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 4.2e-84 316.2 451 41.2
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.6e-83 313.2 319 53.0
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 2.2e-72 277.3 205 69.3
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.1e-71 273.1 210 58.6
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.6e-70 271.2 251 57.0
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 8.0e-59 232.3 186 58.6
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 6.8e-58 229.2 236 50.4
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.4e-55 220.7 191 63.4
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 4.5e-46 189.9 118 73.7
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 3.3e-44 183.7 128 68.8
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 1.8e-39 167.9 116 72.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 5.0e-29 133.3 108 63.9
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 2.5e-28 131.0 99 65.7
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 3.4e-25 120.6 115 53.9
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 8.1e-11 72.8 204 31.4
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 3.1e-10 70.9 44 75.0
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 5.2e-10 70.1 68 52.9
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 4.2e-07 60.5 33 78.8
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 7.1e-07 59.7 52 57.7
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 7.1e-07 59.7 52 57.7
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 1.2e-06 58.9 70 52.9


User provided reference genes

Program Settings