Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G060700 Theobroma cacao HOM05D005381 ORTHO05D006674 6.4e-31 136.7 67 100.0
Thecc.09G339700 Theobroma cacao HOM05D005381 ORTHO05D006674 1.9e-27 125.2 66 92.4
COL.COLO4_18342 Corchorus olitorius HOM05D005381 ORTHO05D006674 3.3e-27 124.4 66 92.4
Gohir.D03G133900 Gossypium hirsutum HOM05D005381 ORTHO05D006674 4.3e-27 124.0 66 90.9
Gorai.003G141000 Gossypium raimondii HOM05D005381 ORTHO05D006674 4.3e-27 124.0 66 90.9
Gohir.A03G034400 Gossypium hirsutum HOM05D005381 ORTHO05D006674 5.6e-27 123.6 66 89.4
Duzib168G0972 Durio zibethinus HOM05D005381 ORTHO05D006674 1.6e-26 122.1 65 92.3
VMungo1127G2043 Vigna mungo HOM05D005381 ORTHO05D006674 2.1e-26 121.7 65 89.2
Phvul.011G078600 Phaseolus vulgaris HOM05D005381 ORTHO05D006674 2.8e-26 121.3 65 89.2
Rhsim13G0093900 Rhododendron simsii HOM05D005381 ORTHO05D006674 8.1e-26 119.8 65 87.7
Dinv32755 Davidia involucrata HOM05D005381 ORTHO05D006674 1.1e-25 119.4 66 86.4
Cpa.g.sc898.4 Carica papaya HOM05D005381 ORTHO05D006674 1.4e-25 119.0 66 86.4
Haze_23841 Corylus avellana HOM05D005381 ORTHO05D006674 2.4e-25 118.2 66 84.8
DCAR_018815 Daucus carota HOM05D005381 ORTHO05D006674 3.1e-25 117.9 66 84.8
arahy.Tifrunner.gnm1.ann1.7B6ACI Arachis hypogaea HOM05D005381 ORTHO05D006674 4.0e-25 117.5 65 84.6
arahy.Tifrunner.gnm1.ann1.I533MD Arachis hypogaea HOM05D005381 ORTHO05D006674 4.0e-25 117.5 65 84.6
Glyma.11G147200 Glycine max HOM05D005381 ORTHO05D006674 4.0e-25 117.5 65 86.2
Glyma.12G068100 Glycine max HOM05D005381 ORTHO05D006674 4.0e-25 117.5 65 86.2
Lalb_Chr01g0004271 Lupinus albus HOM05D005381 ORTHO05D006674 5.3e-25 117.1 65 86.2
Psat7g224200 Pisum sativum HOM05D005381 ORTHO05D006674 5.3e-25 117.1 65 84.6
Ca_05253_v3 Cicer arietinum L. HOM05D005381 ORTHO05D006674 9.0e-25 116.3 65 84.6
Medtr4g059550 Medicago truncatula HOM05D005381 ORTHO05D006674 9.0e-25 116.3 65 84.6
GSVIVG01025178001 Vitis vinifera HOM05D005381 ORTHO05D006674 1.2e-24 115.9 65 86.2
Ciclev10027798m.g Citrus clementina HOM05D005381 ORTHO05D006674 2.0e-24 115.2 65 86.2
Manes.04G021900 Manihot esculenta HOM05D005381 ORTHO05D006674 2.0e-24 115.2 65 83.1
Nn2g10776 Nelumbo nucifera HOM05D005381 ORTHO05D006674 2.6e-24 114.8 66 83.3
THA.LOC104800610 Tarenaya hassleriana HOM05D005381 ORTHO05D006674 2.6e-24 114.8 65 84.6
Atru.chr3.3638 Acer truncatum HOM05D005381 ORTHO05D006674 4.5e-24 114.0 64 84.4
Lsat_1_v5_gn_6_46081 Lactuca sativa HOM05D005381 ORTHO05D006674 5.8e-24 113.6 66 81.8
TPR.G15543 Trifolium pratense HOM05D005381 ORTHO05D006674 5.8e-24 113.6 65 81.5
CiPaw.14G080100 Carya illinoinensis HOM05D005381 ORTHO05D006674 7.6e-24 113.2 66 80.3
vmacro03193 Vaccinium macrocarpon HOM05D005381 ORTHO05D006674 7.6e-24 113.2 66 83.3
Eucgr.J00934 Eucalyptus grandis HOM05D005381 ORTHO05D006674 1.3e-23 112.5 66 81.8
Hma1.2p1_1031F.1_g249980 Hydrangea macrophylla HOM05D005381 ORTHO05D006674 2.9e-23 111.3 65 80.0
ClCG02G021120 Citrullus lanatus HOM05D005381 ORTHO05D006674 3.8e-23 110.9 65 78.5
FvH4_3g32530 Fragaria vesca HOM05D005381 ORTHO05D006674 4.9e-23 110.5 65 83.1
FAN11G2629 Fragaria x ananassa HOM05D005381 ORTHO05D006674 4.9e-23 110.5 65 83.1
FAN21G0488 Fragaria x ananassa HOM05D005381 ORTHO05D006674 4.9e-23 110.5 65 83.1
Lj3g0020359 Lotus japonicus HOM05D005381 ORTHO05D006674 4.9e-23 110.5 65 83.1
Prupe.6G100600 Prunus persica HOM05D005381 ORTHO05D006674 4.9e-23 110.5 65 83.1
TAR636G1844 Trochodendron aralioides HOM05D005381 ORTHO05D006674 8.4e-23 109.8 66 78.8
TAR636G1890 Trochodendron aralioides HOM05D005381 ORTHO05D006674 8.4e-23 109.8 66 78.8
Aa31LG5G7770 Aethionema arabicum HOM05D005381 ORTHO05D006674 1.1e-22 109.4 65 80.0
FAN25G3738 Fragaria x ananassa HOM05D005381 ORTHO05D006674 1.1e-22 109.4 65 83.1
CSS0008106 Camellia sinensis var. sinensis HOM05D005381 ORTHO05D006674 1.9e-22 108.6 66 78.8
CSS0041314 Camellia sinensis var. sinensis HOM05D005381 ORTHO05D006674 1.9e-22 108.6 66 78.8
MD11G1134700 Malus domestica HOM05D005381 ORTHO05D006674 1.9e-22 108.6 65 80.0
Peaxi162Scf00270g00915 Petunia axillaris HOM05D005381 ORTHO05D006674 2.4e-22 108.2 67 79.1
QL01p022359 Quercus lobata HOM05D005381 ORTHO05D006674 2.4e-22 108.2 66 77.3
CsaV3_6G013880 Cucumis sativus L. HOM05D005381 ORTHO05D006674 3.2e-22 107.8 65 75.4
MD03G1116700 Malus domestica HOM05D005381 ORTHO05D006674 3.2e-22 107.8 65 80.0
CANSAT54G1801 Cannabis sativa HOM05D005381 ORTHO05D006674 4.2e-22 107.5 65 76.9
Aqoxy5G04136 Aquilegia oxysepala HOM05D005381 ORTHO05D006674 5.4e-22 107.1 66 80.3
RcHm_v2.0_Chr5g0059591 Rosa chinensis HOM05D005381 ORTHO05D006674 5.4e-22 107.1 65 81.5
Migut.D02217 Erythranthe guttata HOM05D005381 ORTHO05D006674 7.1e-22 106.7 67 76.1
Potri.009G013000 Populus trichocarpa HOM05D005381 ORTHO05D006674 7.1e-22 106.7 65 80.0
SalBow3G2811 Salvia bowleyana HOM05D005381 ORTHO05D006674 7.1e-22 106.7 67 79.1
Aqoxy1G01625 Aquilegia oxysepala HOM05D005381 ORTHO05D006674 9.3e-22 106.3 66 80.3
Cc01_g11200 Coffea canephora HOM05D005381 ORTHO05D006674 1.2e-21 105.9 67 79.1
HanXRQChr13g0403491 Helianthus annuus HOM05D005381 ORTHO05D006674 1.2e-21 105.9 65 76.9
Nitab4.5_0003701g0010 Nicotiana tabacum HOM05D005381 ORTHO05D006674 1.2e-21 105.9 67 77.6
CDE08G1578 Ceratophyllum demersum HOM05D005381 ORTHO05D006674 1.6e-21 105.5 66 78.8
MBI10_g13354_MAGBIO Magnolia biondii HOM05D005381 ORTHO05D006674 1.6e-21 105.5 66 80.3
CDE02G3164 Ceratophyllum demersum HOM05D005381 ORTHO05D006674 2.1e-21 105.1 66 78.8
Lalb_Chr19g0137331 Lupinus albus HOM05D005381 ORTHO05D006674 2.1e-21 105.1 65 76.9
PGR119G0002 Punica granatum HOM05D005381 ORTHO05D006674 2.7e-21 104.8 64 76.6
Zm00001eb089580 Zea mays HOM05D005381 ORTHO05D006674 2.7e-21 104.8 65 78.5
AUR62039627 Chenopodium quinoa HOM05D005381 ORTHO05D006674 3.5e-21 104.4 65 76.9
SGA_v2.0_scaffold97G29223 Striga asiatica HOM05D005381 ORTHO05D006674 6.0e-21 103.6 65 76.9
Nitab4.5_0000650g0150 Nicotiana tabacum HOM05D005381 ORTHO05D006674 7.9e-21 103.2 66 75.8
PSO339G1100 Papaver somniferum HOM05D005381 ORTHO05D006674 7.9e-21 103.2 64 78.1
PSO063G6738 Papaver somniferum HOM05D005381 ORTHO05D006674 1.8e-20 102.1 64 78.1
EL10Ac9g22502 Beta vulgaris HOM05D005381 ORTHO05D006674 2.3e-20 101.7 65 75.4
MELO3C025769.2 Cucumis melo HOM05D005381 ORTHO05D006674 3.0e-20 101.3 58 81.0
Oeu002863.1 Olea europaea HOM05D005381 ORTHO05D006674 3.0e-20 101.3 64 78.1
HPP92_012655 Vanilla planifolia HOM05D005381 ORTHO05D006674 5.1e-20 100.5 66 74.2
ATR0115G037 Amborella trichopoda HOM05D005381 ORTHO05D006674 1.5e-19 99.0 65 72.3
AUR62024992 Chenopodium quinoa HOM05D005381 ORTHO05D006674 1.5e-19 99.0 65 73.8
ECA233G6150 Erigeron canadensis HOM05D005381 ORTHO05D006674 1.9e-19 98.6 64 73.4
Sabra09G0008300 Salix brachista HOM05D005381 ORTHO05D006674 4.3e-19 97.4 73 69.9
Solyc11g069340.2 Solanum lycopersicum HOM05D005381 ORTHO05D006674 4.3e-19 97.4 66 75.8
Sopen11g028060 Solanum pennellii HOM05D005381 ORTHO05D006674 4.3e-19 97.4 66 75.8
Actinidia07132 Actinidia chinensis HOM05D005381 ORTHO05D006674 5.6e-19 97.1 60 80.0
Sed0021600 Sechium edule HOM05D005381 ORTHO05D006674 1.3e-18 95.9 65 70.8
CAN.G631.20 Capsicum annuum HOM05D005381 ORTHO05D006674 3.6e-18 94.4 66 71.2
Ah.01g002840 Amaranthus hybridus HOM05D005381 ORTHO05D006674 4.8e-18 94.0 65 73.8
CARHR121390 Cardamine hirsuta HOM05D005381 ORTHO05D006674 8.1e-18 93.2 64 70.3
SEGI_24136 Sequoiadendron giganteum HOM05D005381 ORTHO05D006674 1.1e-17 92.8 64 70.3
Carub.0004s0939 Capsella rubella HOM05D005381 ORTHO05D006674 1.4e-17 92.4 64 68.8
Thhalv10016347m.g Eutrema salsugineum HOM05D005381 ORTHO05D006674 1.4e-17 92.4 65 67.7
AL4G21570 Arabidopsis lyrata HOM05D005381 ORTHO05D006674 1.8e-17 92.0 65 66.2
unitig_899.g14913 Utricularia gibba HOM05D005381 ORTHO05D006674 5.3e-17 90.5 70 65.7
A07p19020 Brassica napus HOM05D005381 ORTHO05D006674 2.0e-16 88.6 65 66.2
C04p22930 Brassica napus HOM05D005381 ORTHO05D006674 2.0e-16 88.6 65 66.2
BolC4t23787H Brassica oleracea HOM05D005381 ORTHO05D006674 2.0e-16 88.6 65 66.2
BraA07t29607Z Brassica rapa HOM05D005381 ORTHO05D006674 2.0e-16 88.6 65 66.2
Sp4g11270 Schrenkiella parvula HOM05D005381 ORTHO05D006674 2.0e-16 88.6 65 64.6
FAN16G3073 Fragaria x ananassa HOM05D005381 ORTHO05D006674 2.2e-15 85.1 50 80.0
Mapoly0078s0012 Marchantia polymorpha HOM05D005381 ORTHO05D006674 3.8e-15 84.3 67 58.2
Actinidia24096 Actinidia chinensis HOM05D005381 ORTHO05D006674 1.1e-14 82.8 54 75.9
Duzib170G0010 Durio zibethinus HOM05D005381 ORTHO05D006674 1.2e-13 79.3 46 84.8
Lj2A1029T35 Lonicera japonica HOM05D005381 ORTHO05D006674 1.6e-13 79.0 69 62.3
AT2G28450 Arabidopsis thaliana HOM05D005381 ORTHO05D006674 3.5e-13 77.8 65 60.0
SMO340G0204 Selaginella moellendorffii HOM05D005381 ORTHO05D006674 3.5e-13 77.8 66 57.6
Hund08141 Selenicereus undatus HOM05D005381 ORTHO05D006674 7.9e-13 76.6 73 53.4
CBR_g8736 Chara braunii HOM05D005381 ORTHO05D006674 1.9e-11 72.0 70 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3233 Anthoceros agrestis HOM05D005381 ORTHO05D006674 2.5e-11 71.6 66 51.5
Pp3c10_16370 Physcomitrium patens HOM05D005381 ORTHO05D006674 6.2e-10 67.0 65 52.3
BcaC01g02792 Brassica carinata HOM05D005381 ORTHO05D006674 3.1e-09 64.7 49 63.3
C03p60310 Brassica napus HOM05D005381 ORTHO05D006674 3.1e-09 64.7 49 63.3
C03p60360 Brassica napus HOM05D005381 ORTHO05D006674 3.1e-09 64.7 49 63.3
C03p60390 Brassica napus HOM05D005381 ORTHO05D006674 3.1e-09 64.7 49 63.3
BolC3t18293H Brassica oleracea HOM05D005381 ORTHO05D006674 3.1e-09 64.7 49 63.3
BolC3t18299H Brassica oleracea HOM05D005381 ORTHO05D006674 3.1e-09 64.7 49 63.3
BolC3t18296H Brassica oleracea HOM05D005381 ORTHO05D006674 7.6e-08 60.1 50 62.0


User provided reference genes

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