Gene: AT2G28450
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G28450
- Transcript Identifier AT2G28450.2
- Gene Type Coding gene
- Location Chr2 : 12162180-12165761 : negative
Gene Family Information
- ID HOM05D005381
- #Genes/#Species 141/95
- Phylogenetic origin
- ID ORTHO05D006674
- #Genes/#Species 139/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G28450.2
- uniprot Q8L7S3
Descriptions
- Description zinc finger (CCCH-type) family protein
- Computational description zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, RNA methyltransferase activity, nucleic acid binding; INVOLVED IN: acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), (Uracil-5)-methyltransferase (InterPro:IPR010280); BEST Arabidopsis thaliana protein match is: RNA methyltransferase family protein (TAIR:AT3G21300.1); Has 8231 Blast hits to 7095 proteins in 1964 species: Archae - 111; Bacteria - 7000; Metazoa - 343; Fungi - 116; Plants - 121; Viruses - 4; Other Eukaryotes - 536 (source: NCBI BLink).
- Computational description zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, RNA methyltransferase activity, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), (Uracil-5)-methyltransferase (InterPro:IPR010280); BEST Arabidopsis thaliana protein match is: RNA methyltransferase family protein (TAIR:AT3G21300.1).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | Gene Ontology | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0001510 | IEA | GOA Database | RNA methylation | |
| GO:0032259 | IEA | GOA Database | methylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008173 | IEA | Gene Ontology | RNA methyltransferase activity | |
| GO:0008173 | IEA | InterPro | RNA methyltransferase activity | |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 1 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0008168 | IEA | GOA Database | methyltransferase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR010280 | (Uracil-5)-methyltransferase family |
| IPR035979 | RNA-binding domain superfamily |
| IPR000571 | Zinc finger, CCCH-type |
| IPR036855 | Zinc finger, CCCH-type superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR025714 | Methyltransferase domain |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |