Gene: Sopen11g028060

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g028060
  • Transcript Identifier Sopen11g028060.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 63726914-63738529 : positive

Gene Family Information

  • ID HOM05D005381
  • #Genes/#Species 141/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g028060.1

Descriptions

  • Description zinc finger (CCCH-type) family protein | FUNCTIONS IN: zinc ion binding, RNA methyltransferase activity, nucleic acid binding | INVOLVED IN: RNA processing | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , (Uracil-5)-methyltransferase | BEST Arabidopsis thaliana protein match is: RNA methyltransferase family protein .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008173
IEA
InterProRNA methyltransferase activity
GO:0046872
IEA
InterPrometal ion binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT2G28450

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR010280 (Uracil-5)-methyltransferase family
IPR000571 Zinc finger, CCCH-type
IPR036855 Zinc finger, CCCH-type superfamily
IPR025714 Methyltransferase domain
IPR000504 RNA recognition motif domain
Mapman id Description
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)
16.5.7.7 RNA processing.RNA modification.tRNA methylation.tRNA uridine-methyltransferase (TRM2)