Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 4.4e-240 834.3 461 100.0
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 4.0e-156 555.4 482 72.6
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 4.4e-139 498.8 501 64.7
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 5.6e-134 481.9 505 62.8
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 4.0e-132 475.7 505 62.6
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.3e-117 427.6 585 51.5
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 2.2e-85 320.5 444 46.8
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 1.9e-81 307.4 457 45.7
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 6.7e-79 298.9 434 45.9
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 5.7e-78 295.8 432 53.5
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 7.4e-78 295.4 428 44.9
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 4.8e-77 292.7 430 54.4
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 3.8e-74 283.1 390 47.7
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.1e-73 281.6 421 44.7
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 3.2e-73 280.0 445 42.7
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.4e-73 278.5 442 42.8
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 1.5e-70 271.2 486 38.9
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 5.7e-70 269.2 467 48.4
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.3e-69 268.1 431 44.3
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 6.3e-69 265.8 405 44.0
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 6.3e-69 265.8 357 48.5
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 1.8e-68 264.2 527 42.9
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.6e-67 261.2 439 41.7
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 4.5e-67 259.6 406 45.6
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 5.9e-67 259.2 447 40.7
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 7.7e-67 258.8 491 37.7
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.7e-66 257.7 357 45.4
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.5e-66 255.8 419 42.7
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.5e-66 255.8 419 42.7
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.9e-65 254.2 454 39.4
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 7.2e-65 252.3 451 44.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 1.6e-64 251.1 357 44.8
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 4.0e-63 246.5 339 44.5
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 4.0e-63 246.5 350 44.3
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 8.8e-63 245.4 352 44.3
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.2e-62 245.0 349 44.1
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 2.6e-62 243.8 408 41.9
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 2.6e-62 243.8 330 43.0
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 5.7e-62 242.7 413 43.6
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 5.7e-62 242.7 330 43.3
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 7.5e-62 242.3 534 39.5
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 7.5e-62 242.3 399 43.9
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 2.8e-61 240.4 390 40.0
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 4.8e-61 239.6 382 42.1
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.4e-60 238.0 408 43.4
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 1.4e-60 238.0 408 43.1
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 2.4e-60 237.3 372 40.3
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 3.1e-60 236.9 357 42.6
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 9.1e-60 235.3 414 39.1
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.6e-59 234.6 551 40.5
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.0e-59 234.2 548 35.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 3.5e-59 233.4 453 43.9
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 3.5e-59 233.4 381 41.5
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 7.7e-59 232.3 465 37.2
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 1.3e-58 231.5 533 37.3
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.7e-58 231.1 335 43.9
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 2.2e-58 230.7 450 36.9
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 2.9e-58 230.3 230 54.8
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.9e-58 230.3 427 39.6
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 3.8e-58 229.9 231 54.1
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 8.5e-58 228.8 330 43.0
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 8.5e-58 228.8 536 37.3
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.5e-57 228.0 422 39.8
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.5e-57 227.3 542 35.2
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 4.2e-57 226.5 338 47.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 4.2e-57 226.5 386 39.1
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 5.5e-57 226.1 416 41.3
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 7.2e-57 225.7 509 37.7
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 7.2e-57 225.7 384 40.1
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 9.4e-57 225.3 421 39.2
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 9.4e-57 225.3 444 37.6
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.1e-56 224.2 461 36.0
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 8.0e-56 222.2 424 38.2
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.0e-55 221.9 422 39.6
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.4e-55 221.5 189 61.4
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 3.0e-55 220.3 383 40.5
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.0e-55 219.9 538 32.9
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 8.8e-55 218.8 427 37.9
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 8.8e-55 218.8 247 52.2
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 8.8e-55 218.8 463 39.3
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.2e-54 218.4 420 38.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.0e-54 217.6 346 40.8
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 2.6e-54 217.2 529 33.1
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 4.4e-54 216.5 447 35.8
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 5.7e-54 216.1 545 35.6
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.7e-53 214.5 530 36.6
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.7e-53 214.5 343 52.2
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 4.8e-53 213.0 344 41.9
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 4.8e-53 213.0 344 41.9
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 9.1e-52 208.8 548 36.5
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.2e-51 208.4 341 42.8
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 2.0e-51 207.6 453 37.1
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 3.2e-49 200.3 360 39.2
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 3.2e-49 200.3 529 32.3
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 2.0e-43 181.0 275 41.1
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 8.6e-42 175.6 385 33.8
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 5.6e-41 172.9 216 45.4
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 5.2e-39 166.4 338 33.4
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.3e-37 161.8 271 38.7
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 2.3e-34 151.0 317 36.3
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.1e-33 148.7 237 38.4
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 7.3e-33 146.0 273 37.7
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 1.2e-32 145.2 201 39.3
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 8.0e-32 142.5 156 46.2
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 4.9e-29 133.3 202 41.6
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 1.4e-28 131.7 169 43.2
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.0e-27 127.9 266 33.5
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 7.8e-27 125.9 190 39.5
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 2.6e-22 110.9 230 29.6
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.3e-21 108.6 69 73.9
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 9.2e-20 102.4 90 63.3
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 4.4e-14 83.6 52 71.2
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.1e-12 77.0 110 48.2
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 7.1e-12 76.3 106 49.1


User provided reference genes

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