Gene: Solyc05g006070.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g006070.4
  • Transcript Identifier Solyc05g006070.4.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 854795-856874 : positive

Gene Family Information

  • ID HOM05D006873
  • #Genes/#Species 117/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g006070.4.1
  • uniprot A0A3Q7GBV6
  • gene_id Solyc05g006070

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *-* Q84JK1_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G70200
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G70200
GO:0032544
ISO
PLAZA Integrative Orthologyplastid translation AT1G70200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0019843
ISO
PLAZA Integrative OrthologyrRNA binding AT1G70200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G70200
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT1G70200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.4.1.6 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.splicing factor (HPE1)