Gene: Sopen05g002090

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g002090
  • Transcript Identifier Sopen05g002090.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 908879-910954 : positive

Gene Family Information

  • ID HOM05D006873
  • #Genes/#Species 117/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g002090.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: nucleic acid binding | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G70200
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G70200
GO:0032544
ISO
PLAZA Integrative Orthologyplastid translation AT1G70200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0019843
ISO
PLAZA Integrative OrthologyrRNA binding AT1G70200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G70200
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT1G70200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.4.1.6 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.splicing factor (HPE1)