Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 3.6e-312 1073.9 532 100.0
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 9.3e-258 893.3 538 82.3
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 1.2e-257 892.9 538 82.3
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.5e-244 849.4 518 81.7
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 6.7e-224 780.8 544 71.9
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 3.1e-221 771.9 539 72.2
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 3.1e-221 771.9 547 71.7
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 9.1e-221 770.4 541 73.6
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 2.2e-219 765.8 543 70.7
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 1.8e-216 756.1 550 70.4
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 2.3e-216 755.7 542 69.7
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 6.7e-216 754.2 540 70.9
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.5e-215 753.1 532 73.1
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 1.1e-213 746.9 570 68.6
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 9.1e-213 743.8 529 70.5
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.0e-211 740.3 503 76.5
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.3e-211 740.0 541 70.1
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 2.9e-211 738.8 539 69.4
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.2e-210 735.3 540 69.6
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 4.2e-210 734.9 538 69.5
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 5.5e-210 734.6 549 68.3
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.1e-209 732.6 544 68.9
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.1e-209 732.6 545 68.1
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 2.1e-209 732.6 541 69.9
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 2.7e-209 732.3 542 69.0
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 6.1e-209 731.1 550 69.1
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.0e-208 730.3 538 69.1
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 1.4e-208 729.9 541 69.5
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.3e-208 729.2 548 69.7
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 2.3e-208 729.2 536 68.7
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 3.4e-207 725.3 544 68.9
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 5.7e-207 724.5 542 68.3
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 7.5e-207 724.2 533 67.9
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 7.5e-207 724.2 541 68.9
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 7.5e-207 724.2 548 68.4
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 9.7e-207 723.8 560 66.4
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 2.8e-206 722.2 582 64.6
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 2.8e-206 722.2 533 67.7
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.8e-206 722.2 543 67.0
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 1.1e-205 720.3 538 67.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.1e-205 720.3 541 68.6
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.8e-205 719.5 546 67.8
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.8e-205 719.5 538 67.1
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 9.1e-205 717.2 565 65.5
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 2.0e-204 716.1 543 68.7
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 4.5e-204 714.9 545 68.1
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 5.9e-204 714.5 511 71.2
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 8.5e-203 710.7 540 67.0
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.9e-202 709.5 542 67.2
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 3.2e-202 708.8 555 65.8
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 7.2e-202 707.6 546 66.8
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 7.2e-202 707.6 544 66.5
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 3.6e-201 705.3 542 65.5
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 3.6e-201 705.3 542 67.3
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 3.6e-201 705.3 542 67.3
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.8e-200 703.0 547 66.7
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 3.0e-200 702.2 544 67.6
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 7.5e-199 697.6 547 66.4
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.3e-198 696.8 552 64.9
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.7e-198 696.4 546 66.3
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 3.1e-197 692.2 543 65.7
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.2e-196 690.3 545 65.3
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.6e-196 689.9 642 59.3
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 2.0e-196 689.5 559 64.0
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 2.0e-196 689.5 559 64.2
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 4.5e-196 688.3 524 67.2
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.7e-195 686.4 546 65.4
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 6.6e-195 684.5 570 63.5
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 6.6e-195 684.5 538 65.4
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 1.1e-194 683.7 524 66.4
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.4e-192 676.8 595 60.2
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.3e-192 676.0 552 63.2
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.0e-191 672.9 541 66.0
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 5.7e-191 671.4 539 64.2
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 9.8e-191 670.6 541 64.9
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 2.8e-190 669.1 555 63.4
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.3e-187 660.2 572 59.6
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 2.1e-185 652.9 573 61.1
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 2.1e-185 652.9 534 63.3
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 6.8e-184 647.9 546 63.4
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 5.8e-183 644.8 518 63.7
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 1.7e-182 643.3 561 59.7
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.7e-179 633.3 492 64.8
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.9e-178 629.8 479 68.3
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.0e-176 622.1 450 70.9
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 3.7e-174 615.5 483 66.5
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 1.9e-173 613.2 391 77.5
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 5.4e-173 611.7 542 57.6
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 9.2e-173 610.9 538 61.5
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 2.7e-172 609.4 556 56.8
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.5e-170 602.8 549 59.4
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.1e-168 595.9 557 58.3
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 4.4e-167 592.0 567 55.2
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 2.9e-166 589.3 464 64.0
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.4e-166 588.2 541 59.3
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.4e-158 561.2 529 58.8
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.3e-155 553.9 384 71.4
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 9.9e-151 537.7 439 63.6
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.2e-150 536.6 554 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.0e-139 499.6 531 49.9
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.8e-137 492.3 275 84.7
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 4.8e-137 492.3 271 85.2
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 5.1e-131 472.2 530 52.6
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 3.3e-130 469.5 550 46.7
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 7.9e-124 448.4 462 53.7
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.9e-117 427.2 378 60.6
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.4e-115 421.0 346 59.8
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.5e-111 407.5 536 47.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 3.3e-106 389.8 320 58.1
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.7e-100 370.2 217 77.4
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.3e-99 367.1 373 57.4
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.1e-92 342.4 270 64.8
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 7.5e-90 335.5 403 48.9
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.7e-89 334.3 186 84.4
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.4e-88 331.3 186 83.9
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.1e-88 330.1 392 50.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 3.6e-84 316.6 558 34.6
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 3.5e-79 300.1 506 37.4
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 6.6e-78 295.8 485 37.3
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 8.0e-76 288.9 173 77.5
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.0e-74 284.3 261 60.9
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 3.3e-69 266.9 277 56.3
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 9.5e-69 265.4 312 42.9
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.1e-64 251.9 140 83.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 2.7e-63 247.3 272 52.6
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 6.6e-62 242.7 312 41.0
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.2e-56 223.8 119 86.6
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.6e-55 221.5 268 50.0
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.6e-54 216.1 294 45.9
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.6e-44 183.7 355 34.1
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 8.4e-41 172.6 225 48.4
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 5.4e-40 169.9 93 86.0
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.5e-37 161.8 466 26.0
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 2.6e-34 151.0 124 60.5
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 6.4e-33 146.4 376 29.0
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 3.2e-32 144.1 81 82.7
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 4.5e-26 123.6 99 63.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 3.9e-22 110.5 62 82.3
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 5.5e-16 90.1 182 31.3
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 2.7e-15 87.8 64 67.2
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 8.2e-12 76.3 60 58.3
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.1e-08 65.9 169 29.0
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 1.3e-06 58.9 45 62.2
FvH4_6g44671 Fragaria vesca HOM05D005206 ORTHO05D006219 5.1e-06 57.0 35 80.0


User provided reference genes

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