Gene: Cfa009102
General Information
Structural Information
- Species Carpinus fangiana
- Gene Identifier Cfa009102
- Transcript Identifier Cfa009102.t1
- Gene Type Coding gene
- Location Cfa03 : 24211141-24221157 : positive
Gene Family Information
- ID HOM05D005206
- #Genes/#Species 145/100
- Phylogenetic origin
- ID ORTHO05D006219
- #Genes/#Species 146/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Cfa009102.t1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0097510 | ISO | PLAZA Integrative Orthology | base-excision repair, AP site formation via deaminated base removal | Os06g0237200 |
| GO:0006289 | ISO | PLAZA Integrative Orthology | nucleotide-excision repair | AT1G10520 |
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT1G10520 |
| GO:0010224 | ISO | PLAZA Integrative Orthology | response to UV-B | AT1G10520 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT1G10520 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003887 | IEA | InterPro | DNA-directed DNA polymerase activity | |
| GO:0034061 | IEA | InterPro | DNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G10520 |
| GO:0051575 | ISO | PLAZA Integrative Orthology | 5'-deoxyribose-5-phosphate lyase activity | Os06g0237200 |
| GO:0030145 | ISO | PLAZA Integrative Orthology | manganese ion binding | Os06g0237200 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002054 | DNA-directed DNA polymerase X |
| IPR029398 | DNA polymerase beta, thumb domain |
| IPR037160 | DNA polymerase, thumb domain superfamily |
| IPR002008 | DNA polymerase family X, beta-like |
| IPR043519 | Nucleotidyltransferase superfamily |
| IPR010996 | DNA polymerase beta-like, N-terminal domain |
| IPR036420 | BRCT domain superfamily |
| IPR022312 | DNA polymerase family X |
| IPR027421 | DNA polymerase lambda lyase domain superfamily |
| IPR018944 | DNA polymerase lambda, fingers domain |
| IPR028207 | DNA polymerase beta, palm domain |
| Mapman id | Description |
|---|---|
| 14.2.4 | DNA damage response.DNA repair polymerase activities.DNA polymerase lambda (POLL) |
| 15.6.1.2.3.9 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component PRIN2 |