Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G185700 Theobroma cacao HOM05D001410 ORTHO05D409339 1.2e-39 166.0 82 100.0
Thecc.04G208500 Theobroma cacao HOM05D001410 ORTHO05D408880 9.0e-11 70.1 50 74.0
Duzib268G0962 Durio zibethinus HOM05D001410 ORTHO05D003969 5.8e-10 67.4 57 66.7
Duzib268G1140 Durio zibethinus HOM05D001410 ORTHO05D003969 5.8e-10 67.4 57 66.7
Duzib268G1550 Durio zibethinus HOM05D001410 ORTHO05D003969 1.7e-09 65.9 57 64.9
Duzib133G0171 Durio zibethinus HOM05D001410 ORTHO05D003969 2.2e-09 65.5 57 66.7
Thecc.01G325200 Theobroma cacao HOM05D001410 ORTHO05D003969 2.2e-09 65.5 57 66.7
Gohir.A06G209000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 5.0e-09 64.3 57 64.9
Gohir.A12G120000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 5.0e-09 64.3 57 64.9
Gohir.D06G212000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 5.0e-09 64.3 57 64.9
Gohir.D12G123600 Gossypium hirsutum HOM05D001410 ORTHO05D003969 5.0e-09 64.3 57 64.9
Gorai.008G134700 Gossypium raimondii HOM05D001410 ORTHO05D003969 5.0e-09 64.3 57 64.9
Gorai.010G254000 Gossypium raimondii HOM05D001410 ORTHO05D015240 5.0e-09 64.3 57 64.9
MSTRG.21039 Avicennia marina HOM05D001410 ORTHO05D003969 1.4e-08 62.8 57 61.4
Migut.N02489 Erythranthe guttata HOM05D001410 ORTHO05D003969 1.4e-08 62.8 57 61.4
Peaxi162Scf00045g00024 Petunia axillaris HOM05D001410 ORTHO05D003969 1.4e-08 62.8 71 53.5
Migut.D02441 Erythranthe guttata HOM05D001410 ORTHO05D003969 1.9e-08 62.4 57 61.4
Peaxi162Scf00207g00533 Petunia axillaris HOM05D001410 ORTHO05D003969 2.5e-08 62.0 71 53.5
unitig_27.g25116 Utricularia gibba HOM05D001410 ORTHO05D003969 2.5e-08 62.0 57 59.6
Atru.chr5.3423 Acer truncatum HOM05D001410 ORTHO05D003969 4.2e-08 61.2 56 60.7
SalBow3G3029 Salvia bowleyana HOM05D001410 ORTHO05D003969 5.5e-08 60.8 57 59.6
Potri.014G112400 Populus trichocarpa HOM05D001410 ORTHO05D003969 7.1e-08 60.5 57 59.6
Sabra14G0082700 Salix brachista HOM05D001410 ORTHO05D003969 7.1e-08 60.5 57 59.6
CAN.G1490.15 Capsicum annuum HOM05D001410 ORTHO05D003969 9.3e-08 60.1 69 53.6
Nitab4.5_0006185g0010 Nicotiana tabacum HOM05D001410 ORTHO05D003969 9.3e-08 60.1 71 53.5
Oeu007521.3 Olea europaea HOM05D001410 ORTHO05D003969 9.3e-08 60.1 57 59.6
Oeu038081.1 Olea europaea HOM05D001410 ORTHO05D003969 9.3e-08 60.1 57 59.6
Solyc06g068320.3 Solanum lycopersicum HOM05D001410 ORTHO05D003969 9.3e-08 60.1 69 53.6
Sopen06g025590 Solanum pennellii HOM05D001410 ORTHO05D003969 9.3e-08 60.1 69 53.6
PGSC0003DMG400028502 Solanum tuberosum HOM05D001410 ORTHO05D003969 9.3e-08 60.1 69 53.6
SGA_v2.0_scaffold22G09857 Striga asiatica HOM05D001410 ORTHO05D003969 9.3e-08 60.1 57 61.4
HPP92_001179 Vanilla planifolia HOM05D001410 ORTHO05D003969 9.3e-08 60.1 82 47.6
Ciclev10019765m.g Citrus clementina HOM05D001410 ORTHO05D003969 1.6e-07 59.3 50 64.0
Ciclev10031253m.g Citrus clementina HOM05D001410 ORTHO05D003969 1.6e-07 59.3 50 64.0
COL.COLO4_23130 Corchorus olitorius HOM05D001410 ORTHO05D003969 1.6e-07 59.3 57 59.6
Manes.01G235100 Manihot esculenta HOM05D001410 ORTHO05D003969 1.6e-07 59.3 57 57.9
Nitab4.5_0000373g0210 Nicotiana tabacum HOM05D001410 ORTHO05D003969 1.6e-07 59.3 71 53.5
Hund19272 Selenicereus undatus HOM05D001410 ORTHO05D003969 1.6e-07 59.3 50 64.0
SGA_v2.0_scaffold147G36388 Striga asiatica HOM05D001410 ORTHO05D003969 1.6e-07 59.3 57 61.4
TWI32G0004 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 1.6e-07 59.3 57 57.9
Sopen03g036220 Solanum pennellii HOM05D001410 ORTHO05D003969 2.1e-07 58.9 71 52.1
SGA_v2.0_scaffold262G45927 Striga asiatica HOM05D001410 ORTHO05D003969 2.1e-07 58.9 50 64.0
Atru.chr4.407 Acer truncatum HOM05D001410 ORTHO05D003969 2.7e-07 58.5 57 57.9
MSTRG.18762 Avicennia marina HOM05D001410 ORTHO05D003969 2.7e-07 58.5 57 57.9
Sc18g0006170 Simmondsia chinensis HOM05D001410 ORTHO05D003969 2.7e-07 58.5 57 56.1
Solyc03g117330.4 Solanum lycopersicum HOM05D001410 ORTHO05D003969 2.7e-07 58.5 71 52.1
PGSC0003DMG400014136 Solanum tuberosum HOM05D001410 ORTHO05D003969 2.7e-07 58.5 71 52.1
Os12g0443700 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D003969 3.5e-07 58.2 57 56.1
Sc25g0004870 Simmondsia chinensis HOM05D001410 ORTHO05D003969 3.5e-07 58.2 57 56.1
Zm00001eb073240 Zea mays HOM05D001410 ORTHO05D003969 3.5e-07 58.2 57 56.1
Zm00001eb202580 Zea mays HOM05D001410 ORTHO05D003969 3.5e-07 58.2 57 56.1
MD13G1156800 Malus domestica HOM05D001410 ORTHO05D003969 4.6e-07 57.8 50 66.0
MD16G1134100 Malus domestica HOM05D001410 ORTHO05D003969 4.6e-07 57.8 50 66.0
Nn1g09397 Nelumbo nucifera HOM05D001410 ORTHO05D003969 4.6e-07 57.8 57 59.6
Nn7g37405 Nelumbo nucifera HOM05D001410 ORTHO05D003969 6.1e-07 57.4 57 59.6
Potri.002G187000 Populus trichocarpa HOM05D001410 ORTHO05D003969 6.1e-07 57.4 50 62.0
Lsat_1_v5_gn_9_93401 Lactuca sativa HOM05D001410 ORTHO05D003969 7.9e-07 57.0 65 53.8
TWI14G1260 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 7.9e-07 57.0 57 54.4
GSVIVG01028250001 Vitis vinifera HOM05D001410 ORTHO05D003969 7.9e-07 57.0 57 54.4
CAN.G407.29 Capsicum annuum HOM05D001410 ORTHO05D015240 1.0e-06 56.6 50 62.0
CiPaw.07G125500 Carya illinoinensis HOM05D001410 ORTHO05D003969 1.0e-06 56.6 57 54.4
DCAR_002557 Daucus carota HOM05D001410 ORTHO05D003969 1.0e-06 56.6 57 56.1
Dinv29495 Davidia involucrata HOM05D001410 ORTHO05D003969 1.0e-06 56.6 50 62.0
Prupe.1G103500 Prunus persica HOM05D001410 ORTHO05D003969 1.0e-06 56.6 71 49.3
Lj6A703T91 Lonicera japonica HOM05D001410 ORTHO05D003969 1.3e-06 56.2 57 56.1
MBI14_g06389_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D003969 1.3e-06 56.2 50 64.0
SGA_v2.0_scaffold87G27134 Striga asiatica HOM05D001410 ORTHO05D003969 1.3e-06 56.2 58 51.7
MELO3C017711.2 Cucumis melo HOM05D001410 ORTHO05D003969 1.8e-06 55.8 50 64.0
Lsat_1_v5_gn_8_103640 Lactuca sativa HOM05D001410 ORTHO05D003969 1.8e-06 55.8 80 46.2
Lj1g0011311 Lotus japonicus HOM05D001410 ORTHO05D003969 1.8e-06 55.8 67 52.2
Lj2g0010468 Lotus japonicus HOM05D001410 ORTHO05D003969 1.8e-06 55.8 57 56.1
Lalb_Chr15g0077891 Lupinus albus HOM05D001410 ORTHO05D003969 1.8e-06 55.8 67 55.2
PGR142G3315 Punica granatum HOM05D001410 ORTHO05D003969 1.8e-06 55.8 57 56.1
QL11p011484 Quercus lobata HOM05D001410 ORTHO05D003969 1.8e-06 55.8 57 56.1
ATR0730G099 Amborella trichopoda HOM05D001410 ORTHO05D003969 2.3e-06 55.5 50 62.0
CANSAT54G2973 Cannabis sativa HOM05D001410 ORTHO05D003969 2.3e-06 55.5 57 54.4
SalBow6G3314 Salvia bowleyana HOM05D001410 ORTHO05D003969 2.3e-06 55.5 73 47.9
Aqoxy6G01698 Aquilegia oxysepala HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 56.1
Eucgr.J00690 Eucalyptus grandis HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 56.1
Eucgr.K00563 Eucalyptus grandis HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 56.1
Hma1.2p1_0484F.1_g162960 Hydrangea macrophylla HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 56.1
Hma1.2p1_0484F.1_g162965 Hydrangea macrophylla HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 56.1
Lj3C841G7 Lonicera japonica HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 56.1
PSO357G0154 Papaver somniferum HOM05D001410 ORTHO05D003969 3.0e-06 55.1 57 54.4
Psat5g012360 Pisum sativum HOM05D001410 ORTHO05D003969 3.0e-06 55.1 67 50.7
EL10Ac3g06719 Beta vulgaris HOM05D001410 ORTHO05D003969 3.9e-06 54.7 50 60.0
Cfa004912 Carpinus fangiana HOM05D001410 ORTHO05D003969 3.9e-06 54.7 57 54.4
CiPaw.08G082700 Carya illinoinensis HOM05D001410 ORTHO05D015240 3.9e-06 54.7 50 60.0
Ca_09246_v3 Cicer arietinum L. HOM05D001410 ORTHO05D003969 3.9e-06 54.7 67 52.2
ClCG07G015700 Citrullus lanatus HOM05D001410 ORTHO05D003969 3.9e-06 54.7 50 62.0
Cc05_g00870 Coffea canephora HOM05D001410 ORTHO05D003969 3.9e-06 54.7 56 55.4
CsaV3_4G003400 Cucumis sativus L. HOM05D001410 ORTHO05D003969 3.9e-06 54.7 50 62.0
TWI59G1486 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 3.9e-06 54.7 57 49.1
TAR633G0527 Trochodendron aralioides HOM05D001410 ORTHO05D003969 3.9e-06 54.7 57 54.4
Actinidia06405 Actinidia chinensis HOM05D001410 ORTHO05D003969 5.1e-06 54.3 57 54.4
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 5.1e-06 54.3 67 52.2
arahy.Tifrunner.gnm1.ann1.QYSL7K Arachis hypogaea HOM05D001410 ORTHO05D003969 5.1e-06 54.3 67 52.2
ClCG01G007170 Citrullus lanatus HOM05D001410 ORTHO05D003969 5.1e-06 54.3 50 60.0
Glyma.03G224500 Glycine max HOM05D001410 ORTHO05D003969 5.1e-06 54.3 67 50.7
Glyma.19G221400 Glycine max HOM05D001410 ORTHO05D003969 5.1e-06 54.3 67 50.7
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 5.1e-06 54.3 50 62.0
THA.LOC104817431 Tarenaya hassleriana HOM05D001410 ORTHO05D003969 5.1e-06 54.3 52 57.7
VMungo1383G1850 Vigna mungo HOM05D001410 ORTHO05D003969 5.1e-06 54.3 67 50.7
Ah.04g153520 Amaranthus hybridus HOM05D001410 ORTHO05D003969 6.7e-06 53.9 50 58.0
Aa31LG10G16100 Aethionema arabicum HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BcaB02g07357 Brassica carinata HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BcaC07g40705 Brassica carinata HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BcaC08g45185 Brassica carinata HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
A07p25850 Brassica napus HOM05D001410 ORTHO05D000704 8.7e-06 53.5 57 52.6
A09p54220 Brassica napus HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
C06p28090 Brassica napus HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
C08p37080 Brassica napus HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BolC6t37975H Brassica oleracea HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BolC8t51286H Brassica oleracea HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BraA07t30232Z Brassica rapa HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
BraA09t40834Z Brassica rapa HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
Carub.0005s2008 Capsella rubella HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
Carub.0005s2887 Capsella rubella HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
CARHR172460 Cardamine hirsuta HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 52.6
Cpa.g.sc285.2 Carica papaya HOM05D001410 ORTHO05D003969 8.7e-06 53.5 57 56.1
Medtr7g110660 Medicago truncatula HOM05D001410 ORTHO05D003969 8.7e-06 53.5 67 50.7
Psat3g016680 Pisum sativum HOM05D001410 ORTHO05D003969 8.7e-06 53.5 67 50.7
Sed0015133 Sechium edule HOM05D001410 ORTHO05D003969 8.7e-06 53.5 50 60.0
Sed0023675 Sechium edule HOM05D001410 ORTHO05D003969 8.7e-06 53.5 50 60.0
HPP92_001947 Vanilla planifolia HOM05D001410 ORTHO05D003969 8.7e-06 53.5 50 56.0


User provided reference genes

Program Settings